Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28940 and BPHYT_RS28945 are separated by 10 nucleotidesBPHYT_RS28945 and BPHYT_RS28950 overlap by 10 nucleotidesBPHYT_RS28950 and BPHYT_RS28955 are separated by 62 nucleotidesBPHYT_RS28955 and BPHYT_RS28960 are separated by 456 nucleotides BPHYT_RS28940: BPHYT_RS28940 - divalent ion tolerance protein CutA, at 2,042,739 to 2,045,321 _RS28940 BPHYT_RS28945: BPHYT_RS28945 - endo-1,4-D-glucanase, at 2,045,332 to 2,046,513 _RS28945 BPHYT_RS28950: BPHYT_RS28950 - cellulose synthase, at 2,046,504 to 2,051,213 _RS28950 BPHYT_RS28955: BPHYT_RS28955 - hypothetical protein, at 2,051,276 to 2,052,517 _RS28955 BPHYT_RS28960: BPHYT_RS28960 - histidine kinase, at 2,052,974 to 2,055,637 _RS28960
Group Condition BPHYT_RS28940 BPHYT_RS28945 BPHYT_RS28950 BPHYT_RS28955 BPHYT_RS28960
phage 36hr PHYTO2 MOI 1 +0.3 -1.5 -0.1 -4.5 +0.5
phage 36hr PHYTO3 MOI 1 -0.1 -1.9 -0.0 -1.2 +0.4
phage 36hr PHYTO6 MOI 10 -0.1 -2.5 +0.0 -0.5 +0.2
phage 24hr PHYTO10 MOI 10 -0.1 -0.7 -0.1 -2.2 +0.5
nitrogen source L-Lysine (N) +0.3 -1.6 -0.3 -0.1 -0.7
phage 24hr PHYTO3 MOI 10 +0.1 -0.0 -0.0 -2.1 -0.3
phage 36hr PHYTO11 MOI 1 +0.2 -0.9 -0.0 -1.7 +0.2
carbon source Protocatechuic Acid (C) -0.0 -0.4 -0.0 -2.2 +0.5
phage 36hr PHYTO9 MOI 0.1 -0.1 -0.9 -0.2 -1.3 +0.3
phage 36hr PHYTO2 MOI 0.1 +0.2 +0.0 +0.0 -2.3 -0.0
phage PHYTO3 MOI 0.1 +0.1 -0.3 -0.1 -1.8 +0.2
phage 36hr PHYTO9 MOI 1 +0.3 -1.4 +0.0 -1.0 +0.1
phage 24hr PHYTO9 MOI 0.1 -0.0 -1.5 -0.6 +0.2 +0.0
phage 36hr PHYTO6 MOI 0.1 +0.1 -1.3 +0.1 -0.9 +0.4
phage 24hr PHYTO2 MOI 0.1 +0.3 -1.1 -0.1 -0.8 +0.2
phage 24hr PHYTO7 MOI 1 -0.2 -1.3 -0.4 +0.6 -0.1
carbon source adipate (C) -0.2 -0.5 -0.3 -1.1 +0.8
phage 24hr PHYTO4 MOI 0.1 -0.0 +0.3 +0.2 -2.1 +0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.0 -0.4 +0.2 -1.4 +0.4
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 -0.4 -0.6 -0.3 +0.6 -0.4
phage 36hr PHYTO8 MOI 10 +0.3 -0.7 +0.3 -0.8 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.2 -1.1 -0.0 +0.6 -0.3
carbon source Suberic (C) +0.0 -1.3 -0.0 -0.3 +0.8
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent +0.0 +0.6 +0.2 -1.6 +0.3
carbon source Suberic (C) +0.3 +0.6 -0.2 -1.1 +0.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.1 -0.2 -0.7 +1.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.4 -0.2 -0.5 +1.2
phage 36hr PHYTO6 MOI 1 -0.1 +1.1 +0.2 -0.5 +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.1 +1.8 -0.0 -0.4 +0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +1.1 -0.0 +0.7 +0.5
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BPHYT_RS28940
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BPHYT_RS28945
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