Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28850 and BPHYT_RS28855 are separated by 201 nucleotidesBPHYT_RS28855 and BPHYT_RS28860 are separated by 137 nucleotidesBPHYT_RS28860 and BPHYT_RS28865 are separated by 20 nucleotidesBPHYT_RS28865 and BPHYT_RS28870 are separated by 73 nucleotides BPHYT_RS28850: BPHYT_RS28850 - hypothetical protein, at 2,023,128 to 2,024,228 _RS28850 BPHYT_RS28855: BPHYT_RS28855 - LysR family transcriptional regulator, at 2,024,430 to 2,025,335 _RS28855 BPHYT_RS28860: BPHYT_RS28860 - haloacid dehalogenase, at 2,025,473 to 2,026,144 _RS28860 BPHYT_RS28865: BPHYT_RS28865 - alanine racemase, at 2,026,165 to 2,027,304 _RS28865 BPHYT_RS28870: BPHYT_RS28870 - MarR family transcriptional regulator, at 2,027,378 to 2,027,785 _RS28870
Group Condition BPHYT_RS28850 BPHYT_RS28855 BPHYT_RS28860 BPHYT_RS28865 BPHYT_RS28870
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. -4.5 N.D. -0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.1 N.D. -3.8 N.D. +0.6
phage 24hr PHYTO11 MOI 0.1 +0.1 N.D. -1.4 N.D. -2.0
nutrient L-Serine -0.0 N.D. -2.1 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. -2.0 N.D. -0.5
carbon source D-Glucose (C) -0.2 N.D. -1.9 N.D. -0.6
phage 24hr PHYTO11 MOI 1 +0.2 N.D. -2.5 N.D. -0.3
phage 24hr PHYTO9 MOI 10 +0.3 N.D. +0.4 N.D. -3.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 N.D. -1.0 N.D. -0.9
phage 36hr PHYTO8 MOI 10 +0.5 N.D. +0.0 N.D. -3.0
vitamin No vitamins t1 +0.2 N.D. -1.4 N.D. -1.1
phage 24hr PHYTO6 MOI 10 +0.1 N.D. -2.4 N.D. +0.1
nutrient Min media with glucose +0.1 N.D. -1.3 N.D. -1.0
carbon source Sebacic (C) +0.2 N.D. -1.4 N.D. -0.9
phage 24hr PHYTO9 MOI 0.1 +0.6 N.D. -1.9 N.D. -0.8
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.7 N.D. +0.3 N.D. -2.9
phage 24hr PHYTO MOI 0.1 +0.5 N.D. -1.5 N.D. -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. -1.8 N.D. -0.3
vitamin With vitamins t2 +0.7 N.D. -1.2 N.D. -1.1
phage 24hr PHYTO7 MOI 10 +1.1 N.D. -2.4 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 N.D. +1.8 N.D. -2.7
nophagecontrol 36hr Phyto Lib Only -0.4 N.D. +1.0 N.D. -1.0
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 N.D. +1.7 N.D. -1.2
phage 36hr PHYTO7 MOI 1 +0.2 N.D. +1.6 N.D. -1.4
phage 36hr PHYTO2 MOI 1 +0.3 N.D. +1.2 N.D. -1.0
motility outer cut, LB soft agar motility assay +1.1 N.D. +0.4 N.D. -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. +2.6 N.D. -0.8
phage 24hr PHYTO1 MOI 10 +0.7 N.D. +0.7 N.D. +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.7 N.D. +2.6 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.4 N.D. +2.7 N.D. +0.1
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