Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS28750	BPHYT_RS28755	BPHYT_RS28760	BPHYT_RS28765	BPHYT_RS28770
phage	36hr PHYTO11 MOI 1	N.D.	N.D.	+0.1	-0.8	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.3	-0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.6	+0.2	-0.7
phage	24hr PHYTO2 MOI 1	N.D.	N.D.	+0.2	-1.0	-0.2
phage	24hr PHYTO3 MOI 1	N.D.	N.D.	+0.4	-0.7	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.3	-0.4	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	+0.2	-0.6	-0.6
phage	24hr PHYTO10 MOI 1	N.D.	N.D.	+0.3	-0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.6	+0.7	-0.8
phage	P. phyto corn MOI 0.1	N.D.	N.D.	+0.3	+0.2	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.4	-0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.6	-0.7	-0.2
phage	36hr PHYTO6 MOI 0.1	N.D.	N.D.	+0.2	+0.5	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	+0.4	+0.4	-0.8
carbon source	Protocatechuic Acid (C)	N.D.	N.D.	-0.2	+0.8	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	N.D.	+0.8	-0.7	+0.0
phage	24hr PHYTO3 MOI 10	N.D.	N.D.	+0.4	+0.5	-0.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	+0.1	+0.9	-0.7
carbon source	Azelaic (C)	N.D.	N.D.	-0.2	+0.9	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.4	+0.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	+0.9	-0.5	+0.2
phage	24hr PHYTO4 MOI 10	N.D.	N.D.	+0.2	+0.8	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.9	-0.2	+0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	N.D.	N.D.	-0.3	+0.6	+0.7
carbon source	Protocatechuic Acid (C)	N.D.	N.D.	+0.3	+1.1	-0.5
nophagecontrol	24hr Phyto Lib only	N.D.	N.D.	+0.3	+1.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	+0.3	+1.2	-0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	N.D.	N.D.	+0.8	-0.0	+0.6
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.3	+0.9	+0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	-0.2	+1.8	+0.9