Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28630 and BPHYT_RS28635 are separated by 87 nucleotidesBPHYT_RS28635 and BPHYT_RS28640 are separated by 463 nucleotidesBPHYT_RS28640 and BPHYT_RS28645 are separated by 1 nucleotidesBPHYT_RS28645 and BPHYT_RS28650 overlap by 16 nucleotides BPHYT_RS28630: BPHYT_RS28630 - IclR family transcriptional regulator, at 1,977,819 to 1,978,610 _RS28630 BPHYT_RS28635: BPHYT_RS28635 - hypothetical protein, at 1,978,698 to 1,978,919 _RS28635 BPHYT_RS28640: BPHYT_RS28640 - ATPase, at 1,979,383 to 1,981,047 _RS28640 BPHYT_RS28645: BPHYT_RS28645 - serine/threonine protein kinase, at 1,981,049 to 1,982,041 _RS28645 BPHYT_RS28650: BPHYT_RS28650 - anti-sigma regulatory factor, at 1,982,026 to 1,982,436 _RS28650
Group Condition BPHYT_RS28630 BPHYT_RS28635 BPHYT_RS28640 BPHYT_RS28645 BPHYT_RS28650
phage 36hr PHYTO6 MOI 0.1 -1.9 -0.3 -0.7 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.5 -0.6 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 -0.6 -0.4 -0.4 N.D.
phage 24hr PHYTO6 MOI 0.1 -1.6 +0.1 -0.2 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.6 -0.4 -0.4 N.D.
phage 36hr PHYTO11 MOI 1 -1.0 +0.1 -0.6 -0.3 N.D.
phage 36hr PHYTO6 MOI 10 -2.2 +0.9 -0.2 -0.1 N.D.
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.9 -0.9 +0.1 +0.2 N.D.
phage 36hr PHYTO9 MOI 0.1 -1.3 +0.4 -0.3 -0.3 N.D.
phage 36hr PHYTO11 MOI 0.1 -0.9 +0.2 -0.6 -0.2 N.D.
temperature LB 37C -0.7 -0.5 +0.2 -0.4 N.D.
phage 24hr PHYTO6 MOI 10 -1.2 +0.4 -0.3 +0.2 N.D.
motility outer cut, LB soft agar motility assay -1.2 +0.3 -0.1 +0.4 N.D.
phage P. phyto PHYTO2 MOI 1 +1.0 -1.9 -0.1 +0.4 N.D.
phage 24hr PHYTO11 MOI 0.1 -1.0 +0.7 -0.2 +0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 -0.9 -0.4 +0.4 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.8 +0.4 +0.3 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 -0.0 -1.1 +0.2 N.D.
phage 36hr PHYTO3 MOI 1 -0.3 +0.4 -0.8 +0.4 N.D.
phage 24hr PHYTO2 MOI 1 -0.4 +0.9 -0.5 +0.0 N.D.
phage 36hr PHYTO2 MOI 1 -1.1 +0.6 +0.5 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.1 +1.0 -0.3 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.1 -0.3 -0.6 -0.1 N.D.
carbon source Malonic (C) -0.2 +1.1 -0.6 -0.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.8 -0.4 +0.4 -0.4 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +0.4 +0.7 +0.2 -0.6 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB +0.1 +0.7 -0.8 +0.7 N.D.
lb_dap plate control LB_DAP agar plate, outgrowth in LB +0.7 +0.6 -0.1 -0.4 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.0 +0.2 +0.5 +0.2 N.D.
nitrogen source L-Lysine (N) +1.0 +0.8 +0.2 +0.2 N.D.
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