Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28600 and BPHYT_RS28605 are separated by 278 nucleotidesBPHYT_RS28605 and BPHYT_RS28610 are separated by 454 nucleotidesBPHYT_RS28610 and BPHYT_RS28615 are separated by 186 nucleotidesBPHYT_RS28615 and BPHYT_RS28620 are separated by 5 nucleotides BPHYT_RS28600: BPHYT_RS28600 - ArsC family transcriptional regulator, at 1,969,263 to 1,969,757 _RS28600 BPHYT_RS28605: BPHYT_RS28605 - NADPH-dependent FMN reductase, at 1,970,036 to 1,970,758 _RS28605 BPHYT_RS28610: BPHYT_RS28610 - beta-lactamase, at 1,971,213 to 1,973,081 _RS28610 BPHYT_RS28615: BPHYT_RS28615 - 6-carboxyhexanoate--CoA ligase, at 1,973,268 to 1,975,400 _RS28615 BPHYT_RS28620: BPHYT_RS28620 - enoyl-CoA hydratase, at 1,975,406 to 1,976,188 _RS28620
Group Condition BPHYT_RS28600 BPHYT_RS28605 BPHYT_RS28610 BPHYT_RS28615 BPHYT_RS28620
nitrogen source L-Glutamic (N) +0.6 -1.5 +0.1 N.D. -3.8
phage 24hr PHYTO8 MOI 1 -3.2 -0.3 +0.5 N.D. -1.0
phage 36hr PHYTO9 MOI 1 -2.9 -0.0 +0.0 N.D. -0.9
phage 36hr PHYTO1 MOI 10 -1.7 -0.5 -0.4 N.D. -0.7
carbon source Phenylacetic 5 mM (C) -1.5 -1.2 +0.3 N.D. -0.4
carbon source Suberic (C) -1.8 -0.9 -0.7 N.D. +1.1
phage 36hr PHYTO8 MOI 10 -1.1 -1.3 -0.3 N.D. +0.6
phage 36hr PHYTO1 MOI 1 -1.8 -0.5 -0.4 N.D. +0.9
phage 36hr PHYTO8 MOI 10 -2.7 +0.4 -0.2 N.D. +0.9
phage 36hr PHYTO10 MOI 1 -1.3 -0.9 -0.0 N.D. +1.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.7 -0.3 +0.2 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 -0.8 -0.2 N.D. +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.6 +0.5 +1.2 N.D. -1.1
phage 36hr PHYTO4 MOI 1 -2.0 -0.3 +0.4 N.D. +1.1
carbon source Sebacic (C) +0.3 -1.5 -0.4 N.D. +1.0
phage 36hr PHYTO11 MOI 0.1 -1.6 +0.5 -0.3 N.D. +1.0
nophagecontrol 24hr Phyto Lib Only -1.0 +0.6 -0.8 N.D. +0.7
phage 36hr PHYTO2 MOI 1 -1.4 +0.5 -0.3 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.4 +1.3 -0.3 N.D. +0.0
phage 24hr PHYTO3 MOI 10 -2.1 +0.0 +0.3 N.D. +1.8
phage 36hr PHYTO10 MOI 10 -1.1 -1.0 +0.3 N.D. +1.8
carbon source adipate (C) -0.1 +0.9 -1.4 N.D. +0.8
phage 36hr PHYTO6 MOI 0.1 -0.9 -0.1 -0.4 N.D. +1.7
nophagecontrol 36hr Phyto Lib only -1.2 +1.0 -0.0 N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +0.8 +1.0 N.D. -1.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -1.2 +0.7 +0.2 N.D. +1.2
phage 36hr PHYTO4 MOI 1 +0.1 -0.9 -0.2 N.D. +2.0
phage 24hr PHYTO4 MOI 0.1 -1.0 +1.6 -0.1 N.D. +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.8 +1.5 +0.1 N.D. +1.3
supernatant control Vogels_fungal_media; pH 5.5 -0.0 +1.6 +0.4 N.D. +1.3
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