Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28545 and BPHYT_RS28550 are separated by 13 nucleotidesBPHYT_RS28550 and BPHYT_RS28555 overlap by 4 nucleotidesBPHYT_RS28555 and BPHYT_RS28560 overlap by 4 nucleotidesBPHYT_RS28560 and BPHYT_RS28565 are separated by 9 nucleotides BPHYT_RS28545: BPHYT_RS28545 - acetamidase, at 1,959,980 to 1,960,966 _RS28545 BPHYT_RS28550: BPHYT_RS28550 - ABC transporter, at 1,960,980 to 1,961,687 _RS28550 BPHYT_RS28555: BPHYT_RS28555 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,961,684 to 1,962,394 _RS28555 BPHYT_RS28560: BPHYT_RS28560 - ABC transporter permease, at 1,962,391 to 1,963,461 _RS28560 BPHYT_RS28565: BPHYT_RS28565 - ABC transporter permease, at 1,963,471 to 1,964,340 _RS28565
Group Condition BPHYT_RS28545 BPHYT_RS28550 BPHYT_RS28555 BPHYT_RS28560 BPHYT_RS28565
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -2.6 N.D. N.D. +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days -1.1 N.D. N.D. -0.3 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 N.D. N.D. -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.9 N.D. N.D. -0.5 N.D.
carbon source D-Glucose (C) -0.9 N.D. N.D. -0.5 N.D.
phage 24hr PHYTO2 MOI 0.1 -0.6 N.D. N.D. -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days -0.9 N.D. N.D. -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.6 N.D. N.D. -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 N.D. N.D. -0.5 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 N.D. N.D. -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.0 N.D. N.D. +0.2 N.D.
carbon source Suberic (C) +0.4 N.D. N.D. -0.7 N.D.
carbon source Protocatechuic Acid (C) +0.4 N.D. N.D. -0.8 N.D.
phage 24hr PHYTO10 MOI 10 +0.4 N.D. N.D. -0.7 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. N.D. +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. N.D. -0.6 N.D.
motility outer cut, LB soft agar motility assay +0.6 N.D. N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 N.D. N.D. -0.4 N.D.
phage 24hr PHYTO4 MOI 10 +0.8 N.D. N.D. -0.4 N.D.
nophagecontrol 36hr Phyto Lib only +0.7 N.D. N.D. -0.4 N.D.
carbon source D-Glucose 20 mM (C) +0.8 N.D. N.D. -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. N.D. +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.0 N.D. N.D. -0.2 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +1.3 N.D. N.D. -0.5 N.D.
phage 24hr PHYTO10 MOI 1 +0.5 N.D. N.D. +0.6 N.D.
phage 36hr PHYTO3 MOI 1 +1.0 N.D. N.D. +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 N.D. N.D. -0.1 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.5 N.D. N.D. +0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. N.D. +0.7 N.D.
phage 36hr PHYTO2 MOI 1 +0.8 N.D. N.D. +0.6 N.D.
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