Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28510 and BPHYT_RS28515 overlap by 14 nucleotidesBPHYT_RS28515 and BPHYT_RS28520 are separated by 499 nucleotidesBPHYT_RS28520 and BPHYT_RS28525 are separated by 281 nucleotidesBPHYT_RS28525 and BPHYT_RS28530 are separated by 28 nucleotides BPHYT_RS28510: BPHYT_RS28510 - dioxygenase, at 1,950,820 to 1,952,298 _RS28510 BPHYT_RS28515: BPHYT_RS28515 - mannonate dehydratase, at 1,952,285 to 1,953,337 _RS28515 BPHYT_RS28520: BPHYT_RS28520 - hypothetical protein, at 1,953,837 to 1,955,438 _RS28520 BPHYT_RS28525: BPHYT_RS28525 - amidase, at 1,955,720 to 1,957,240 _RS28525 BPHYT_RS28530: BPHYT_RS28530 - 3-ketoacyl-ACP reductase, at 1,957,269 to 1,958,033 _RS28530
Group Condition BPHYT_RS28510 BPHYT_RS28515 BPHYT_RS28520 BPHYT_RS28525 BPHYT_RS28530
phage 36hr PHYTO4 MOI 1 -0.8 -0.6 -0.3 -0.2 N.D.
phage 36hr PHYTO2 MOI 1 -1.5 -0.8 +0.9 -0.3 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -1.1 -0.6 +0.0 N.D.
phage 24hr PHYTO9 MOI 10 -0.4 -1.3 +0.2 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 +0.1 +0.1 -0.7 N.D.
phage 24hr PHYTO MOI 0.1 -0.9 -0.8 +0.4 +0.1 N.D.
phage 36hr PHYTO6 MOI 10 -1.1 +0.0 +0.2 -0.4 N.D.
phage 36hr PHYTO8 MOI 10 -0.6 -0.2 +0.4 -0.8 N.D.
phage 24hr PHYTO3 MOI 0.1 -0.6 -0.8 +0.6 +0.0 N.D.
phage 24hr PHYTO6 MOI 10 -1.0 -0.4 +0.5 +0.2 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.1 +0.5 -1.4 +0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.4 -0.8 -0.5 +0.3 N.D.
phage 24hr PHYTO10 MOI 10 -0.9 -0.2 +0.8 -0.3 N.D.
phage 36hr PHYTO3 MOI 0.1 -0.9 -0.3 +0.8 -0.1 N.D.
phage 36hr PHYTO1 MOI 10 +0.1 -1.4 +0.7 +0.1 N.D.
phage 24hr PHYTO4 MOI 0.1 -0.6 -0.9 +1.0 +0.1 N.D.
nophagecontrol 36hr Phyto Lib Only -0.5 -0.2 +0.8 -0.3 N.D.
phage 36hr PHYTO4 MOI 0.1 -0.6 -0.3 +0.7 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.9 -0.6 -0.0 N.D.
phage 24hr PHYTO4 MOI 10 -0.6 -0.5 +1.3 -0.1 N.D.
nophagecontrol 24hr Phyto Lib Only -0.6 +0.6 +0.4 -0.3 N.D.
nophagecontrol 36hr Phyto Lib only +0.0 -1.2 +1.1 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 +0.3 -0.4 +0.8 N.D.
phage 24hr PHYTO3 MOI 10 -0.9 +0.7 +0.2 +0.2 N.D.
phage 36hr PHYTO8 MOI 10 -0.0 -0.7 +1.1 -0.1 N.D.
phage 36hr PHYTO6 MOI 0.1 -0.4 +0.9 +0.8 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 +0.9 +0.6 +0.0 N.D.
phage 36hr PHYTO MOI 0.1 -0.3 +0.3 +1.1 +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +1.1 +0.4 +0.1 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.7 +0.4 +0.6 +0.3 N.D.
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