Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28505 and BPHYT_RS28510 are separated by 69 nucleotidesBPHYT_RS28510 and BPHYT_RS28515 overlap by 14 nucleotidesBPHYT_RS28515 and BPHYT_RS28520 are separated by 499 nucleotidesBPHYT_RS28520 and BPHYT_RS28525 are separated by 281 nucleotides BPHYT_RS28505: BPHYT_RS28505 - 5-deoxyglucuronate isomerase, at 1,949,920 to 1,950,750 _RS28505 BPHYT_RS28510: BPHYT_RS28510 - dioxygenase, at 1,950,820 to 1,952,298 _RS28510 BPHYT_RS28515: BPHYT_RS28515 - mannonate dehydratase, at 1,952,285 to 1,953,337 _RS28515 BPHYT_RS28520: BPHYT_RS28520 - hypothetical protein, at 1,953,837 to 1,955,438 _RS28520 BPHYT_RS28525: BPHYT_RS28525 - amidase, at 1,955,720 to 1,957,240 _RS28525
Group Condition BPHYT_RS28505 BPHYT_RS28510 BPHYT_RS28515 BPHYT_RS28520 BPHYT_RS28525
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 +0.4 -0.8 -0.5 +0.3
phage 36hr PHYTO2 MOI 1 +0.8 -1.5 -0.8 +0.9 -0.3
phage 36hr PHYTO4 MOI 1 +1.0 -0.8 -0.6 -0.3 -0.2
phage 24hr PHYTO9 MOI 10 +0.6 -0.4 -1.3 +0.2 +0.0
phage 24hr PHYTO MOI 0.1 +0.9 -0.9 -0.8 +0.4 +0.1
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.4 -0.1 +0.5 -1.4 +0.4
phage 24hr PHYTO3 MOI 0.1 +0.6 -0.6 -0.8 +0.6 +0.0
phage 36hr PHYTO6 MOI 10 +1.1 -1.1 +0.0 +0.2 -0.4
phage 24hr PHYTO6 MOI 10 +0.5 -1.0 -0.4 +0.5 +0.2
phage 36hr PHYTO8 MOI 10 +1.0 -0.6 -0.2 +0.4 -0.8
phage 36hr PHYTO1 MOI 10 +0.5 +0.1 -1.4 +0.7 +0.1
phage 36hr PHYTO9 MOI 0.1 +0.9 -0.9 +0.4 -0.1 -0.2
phage 36hr PHYTO2 MOI 1 +0.8 -0.6 -0.4 +0.5 -0.2
phage 36hr PHYTO3 MOI 0.1 +0.8 -0.9 -0.3 +0.8 -0.1
phage 24hr PHYTO10 MOI 10 +0.8 -0.9 -0.2 +0.8 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.6 +0.3 -0.4 +0.8
phage 36hr PHYTO10 MOI 10 +1.2 -0.2 -0.2 +0.4 -0.7
phage 24hr PHYTO4 MOI 0.1 +0.8 -0.6 -0.9 +1.0 +0.1
phage 24hr PHYTO3 MOI 10 +0.5 -0.9 +0.7 +0.2 +0.2
phage 24hr PHYTO4 MOI 10 +0.7 -0.6 -0.5 +1.3 -0.1
phage 36hr PHYTO4 MOI 0.1 +0.9 -0.6 -0.3 +0.7 +0.2
nophagecontrol 36hr Phyto Lib Only +1.0 -0.5 -0.2 +0.8 -0.3
nophagecontrol 36hr Phyto Lib only +0.8 +0.0 -1.2 +1.1 +0.3
nophagecontrol 24hr Phyto Lib Only +1.1 -0.6 +0.6 +0.4 -0.3
phage 36hr PHYTO8 MOI 10 +0.9 -0.0 -0.7 +1.1 -0.1
phage P. phyto corn MOI 0.1 +1.1 -0.5 +0.1 +0.4 +0.2
phage 36hr PHYTO4 MOI 1 +1.3 -0.2 -0.2 +0.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 -0.5 +0.9 +0.6 +0.0
phage 36hr PHYTO MOI 0.1 +0.8 -0.3 +0.3 +1.1 +0.1
phage 36hr PHYTO6 MOI 0.1 +1.2 -0.4 +0.9 +0.8 -0.2
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