Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS28385	BPHYT_RS28390	BPHYT_RS28395	BPHYT_RS28405	BPHYT_RS28410
phage	24hr PHYTO8 MOI 1	N.D.	N.D.	N.D.	-0.3	-1.8
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-1.2	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.6	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=15_days	N.D.	N.D.	N.D.	-1.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.5	-1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-1.4	-0.5
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	N.D.	N.D.	-1.4	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	N.D.	N.D.	-0.6	-1.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	N.D.	-0.1	-1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.4	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	+0.4	-2.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-1.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.6	-0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.6	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	N.D.	-0.4	-1.0
carbon source	2-Deoxy-D-Ribose (C)	N.D.	N.D.	N.D.	-1.3	+0.3
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	N.D.	-1.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	N.D.	+0.3	-1.1
phage	P. phyto PHYTO2 MOI 1	N.D.	N.D.	N.D.	+0.6	-1.2
phage	24hr PHYTO10 MOI 10	N.D.	N.D.	N.D.	-1.2	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	N.D.	N.D.	-0.9	+0.7
phage	36hr PHYTO8 MOI 10	N.D.	N.D.	N.D.	-0.6	+0.8
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	N.D.	-0.8	+1.3
carbon source	adipate (C)	N.D.	N.D.	N.D.	-0.4	+1.2
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	N.D.	N.D.	-0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	N.D.	-0.3	+1.2
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	N.D.	-0.2	+1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	N.D.	-0.2	+1.8
phage	36hr PHYTO11 MOI 1	N.D.	N.D.	N.D.	+0.6	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	N.D.	+1.6	+0.5