Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS28330	BPHYT_RS28335	BPHYT_RS28340	BPHYT_RS28345	BPHYT_RS28350
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.5	+0.0	+0.1	-1.6	-1.7
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.1	-0.1	+0.2	-0.0	-3.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.1	-0.6	-0.0	-0.4	-1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.1	-0.5	-0.7	-0.6
phage	24hr PHYTO11 MOI 0.1	+0.3	-0.6	+0.5	+0.1	-2.4
phage	36hr PHYTO4 MOI 1	+0.4	-0.5	-0.4	+0.2	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.0	+0.1	-0.6	+0.4	-1.6
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.4	-0.2	-0.5	-0.1	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.6	-0.2	-0.6	-0.6
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.3	+0.4	-0.1	-0.3	-1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.0	+0.4	-0.2	-1.1	+0.6
phage	24hr PHYTO6 MOI 1	+0.7	+0.0	-0.5	+0.2	-1.7
carbon source	D-Glucose (C)	-0.0	-0.1	+0.6	+0.2	-1.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.3	+0.1	+0.6	-0.3	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	+0.1	+0.7	-0.1	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.8	+0.3	+0.3	+0.3	-2.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.2	-0.4	+0.3	-1.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.4	+0.2	+0.6	-0.1	-1.2
phage	36hr PHYTO10 MOI 10	+1.0	+0.3	+0.4	+0.2	-1.2
phage	36hr PHYTO6 MOI 10	+0.2	-0.3	-0.3	+0.6	+1.2
carbon source	Malonic (C)	+0.8	-0.0	+0.1	-0.4	+1.3
nitrogen source	L-Asparagine (N)	-0.3	+0.1	+0.1	+0.5	+1.4
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.3	+0.2	+1.0	-0.2	+0.6
phage	24hr PHYTO MOI 0.1	-0.1	-0.1	+0.3	+0.2	+1.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	+0.8	+0.0	+1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.9	-0.2	+0.0	+0.8	+0.7
phage	36hr PHYTO MOI 0.1	+0.6	-0.0	+0.3	+0.6	+0.8
phage	24hr PHYTO3 MOI 1	+0.7	+0.1	+0.5	+0.3	+0.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	-0.0	+0.5	+0.4	+1.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	+2.0	+0.5	+0.9