Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28270 and BPHYT_RS28275 are separated by 134 nucleotidesBPHYT_RS28275 and BPHYT_RS28280 are separated by 191 nucleotidesBPHYT_RS28280 and BPHYT_RS28285 are separated by 123 nucleotidesBPHYT_RS28285 and BPHYT_RS28290 are separated by 382 nucleotides BPHYT_RS28270: BPHYT_RS28270 - ABC transporter substrate-binding protein, at 1,898,913 to 1,900,034 _RS28270 BPHYT_RS28275: BPHYT_RS28275 - glycerol acyltransferase, at 1,900,169 to 1,900,879 _RS28275 BPHYT_RS28280: BPHYT_RS28280 - hypothetical protein, at 1,901,071 to 1,901,385 _RS28280 BPHYT_RS28285: BPHYT_RS28285 - MFS transporter, at 1,901,509 to 1,902,756 _RS28285 BPHYT_RS28290: BPHYT_RS28290 - hypothetical protein, at 1,903,139 to 1,903,411 _RS28290
Group Condition BPHYT_RS28270 BPHYT_RS28275 BPHYT_RS28280 BPHYT_RS28285 BPHYT_RS28290
phage P. phyto corn MOI 0.1 -0.9 -0.5 -1.4 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -1.1 -0.4 -0.4 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.6 -1.2 -0.6 N.D.
phage 36hr PHYTO6 MOI 10 -0.7 -0.9 +0.4 -1.2 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.9 -0.1 -1.8 +1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.0 +0.4 -1.2 -0.8 N.D.
phage 24hr PHYTO3 MOI 10 -0.3 -0.0 -2.2 +1.1 N.D.
supernatant control Vogels_fungal_media 0.1X +0.1 +0.2 -2.4 +0.6 N.D.
carbon source Suberic (C) +0.4 -0.7 -1.2 +0.1 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.7 -0.3 -0.9 -0.7 N.D.
carbon source Tween 20 (C) -0.5 -0.4 +0.9 -1.1 N.D.
carbon source Suberic (C) -0.8 -0.4 -0.9 +1.1 N.D.
carbon source Disodium Glutarate (C) -0.0 -0.1 -1.5 +1.0 N.D.
phage 36hr PHYTO11 MOI 1 +0.2 +0.4 -1.5 +0.4 N.D.
phage 36hr PHYTO2 MOI 1 +0.4 +0.1 +0.5 -1.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +0.1 -1.5 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.6 +0.7 -1.1 -0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.0 -0.0 -1.3 +0.4 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 -1.3 -0.8 +1.8 +0.4 N.D.
phage PHYTO3 MOI 0.1 -0.4 -0.4 -0.5 +1.4 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X +0.1 +0.5 -1.4 +1.0 N.D.
phage 24hr PHYTO3 MOI 10 +0.8 +0.2 +0.7 -1.5 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.3 +0.6 -1.3 +0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.9 -0.1 -0.9 +0.7 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.8 -0.7 +1.1 +0.4 N.D.
phage P. phyto corn MOI 1 +0.3 -0.4 +0.1 +1.7 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.9 +0.3 -0.3 +1.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 -0.2 +1.6 -0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.5 -0.1 -0.0 +1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.2 +0.4 +0.3 N.D.
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BPHYT_RS28270
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BPHYT_RS28275
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BPHYT_RS28290
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