Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS28255	BPHYT_RS28260	BPHYT_RS28265	BPHYT_RS28270	BPHYT_RS28275
nitrogen source	L-Glutamic (N)	-3.3	-0.6	-0.2	-0.1	-0.0
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.2	-0.8	-0.3	-1.3	-0.8
phage	24hr PHYTO7 MOI 10	-0.9	-0.1	-0.3	-0.6	-0.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	-0.8	-0.3	+0.1	-0.4
phage	36hr PHYTO1 MOI 10	-1.5	-0.2	+0.1	-0.5	+0.1
nophagecontrol	36hr Phyto Lib Only	-0.8	-0.3	+0.3	-0.5	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-2.0	+0.2	+0.5	+0.3	-0.7
nitrogen source	Uridine (N)	-0.2	-1.0	-0.3	-0.8	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.5	-0.2	-0.3	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.0	+0.8	+0.4	-0.5	-0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.8	+0.6	+0.2	-0.2	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.8	-0.2	+0.2	+0.3	+0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.4	-0.3	-0.2	+0.8	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.3	-0.4	+0.2	+0.9	-0.1
phage	36hr PHYTO6 MOI 10	+0.4	+0.2	+0.3	-0.7	-0.9
phage	36hr PHYTO4 MOI 1	+0.5	-0.7	+0.1	-0.8	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.3	+0.2	+0.4	+1.3	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.3	+0.5	+0.2	-0.0	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	-0.8	+0.4	+0.8	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	-0.2	+0.1	+0.6	+0.7
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.6	+0.4	+0.8	-0.9	-0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.8	-0.0	+0.7	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+1.7	-0.3	+0.0	-0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+1.9	-0.3	-0.4	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.0	-0.2	+1.1	+1.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+1.0	-0.4	+0.1	+0.9	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.8	+0.5	+0.3	+0.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.9	-0.1	+0.2	+0.9	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	+0.0	+0.7	+0.9	+0.3
phage	P. phyto PHYTO2 MOI 0.1	+1.3	+0.4	-0.1	+0.4	+0.5