Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS28225 and BPHYT_RS28230 are separated by 139 nucleotidesBPHYT_RS28230 and BPHYT_RS28235 are separated by 16 nucleotidesBPHYT_RS28235 and BPHYT_RS28240 are separated by 45 nucleotidesBPHYT_RS28240 and BPHYT_RS28245 are separated by 36 nucleotides BPHYT_RS28225: BPHYT_RS28225 - L-rhamnose mutarotase, at 1,890,624 to 1,890,947 _RS28225 BPHYT_RS28230: BPHYT_RS28230 - LysR family transcriptional regulator, at 1,891,087 to 1,892,094 _RS28230 BPHYT_RS28235: BPHYT_RS28235 - L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) (from data), at 1,892,111 to 1,892,893 _RS28235 BPHYT_RS28240: BPHYT_RS28240 - L-rhamnonate dehydratase, at 1,892,939 to 1,894,117 _RS28240 BPHYT_RS28245: BPHYT_RS28245 - MFS transporter, at 1,894,154 to 1,895,482 _RS28245
Group Condition BPHYT_RS28225 BPHYT_RS28230 BPHYT_RS28235 BPHYT_RS28240 BPHYT_RS28245
carbon source L-Rhamnose (C) N.D. N.D. -2.9 -3.6 -5.0
phage 36hr PHYTO2 MOI 1 N.D. N.D. -3.0 -0.6 -1.2
phage 36hr PHYTO2 MOI 1 N.D. N.D. -2.4 -0.5 -1.1
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. -1.4 -0.9 -0.5
phage 36hr PHYTO3 MOI 1 N.D. N.D. -1.1 -0.3 -1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. -1.1 -0.8 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. -0.9 -1.2 -0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.4 -0.6 -1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -1.2 -0.7 -0.4
carbon source Xylitol (C) N.D. N.D. -0.3 -1.3 -0.7
phage 24hr PHYTO3 MOI 10 N.D. N.D. -1.7 +0.3 -0.8
phage 36hr PHYTO7 MOI 1 N.D. N.D. -0.6 -0.2 -1.3
phage PHYTO3 MOI 0.1 N.D. N.D. -0.3 -0.2 -1.6
phage 36hr PHYTO4 MOI 1 N.D. N.D. -0.5 -0.5 -1.2
phage 36hr PHYTO10 MOI 10 N.D. N.D. -0.4 -0.1 -1.5
phage P. phyto PHYTO2 MOI 0.1 N.D. N.D. -1.2 +0.0 -0.8
phage 24hr PHYTO4 MOI 10 N.D. N.D. -0.9 +0.7 -1.7
phage 36hr PHYTO7 MOI 0.1 N.D. N.D. +0.3 -0.1 -1.9
phage 24hr PHYTO10 MOI 10 N.D. N.D. -1.4 +0.4 -0.6
phage 36hr PHYTO1 MOI 1 N.D. N.D. +0.2 +0.2 -1.9
phage 36hr PHYTO10 MOI 10 N.D. N.D. -0.6 +0.8 -1.4
phage 36hr PHYTO4 MOI 1 N.D. N.D. +0.3 +1.0 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.5 -0.3 +1.2
motility outer cut, LB soft agar motility assay N.D. N.D. +0.2 +0.5 +1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.6 +0.5 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.5 +0.2 +1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.3 +0.3 +1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.0 +0.4 +2.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.9 -0.1 +2.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.5 +0.5 +3.4
remove
BPHYT_RS28225
plot		 remove
BPHYT_RS28230
plot		 remove
BPHYT_RS28235		 remove
BPHYT_RS28240
plot		 remove
BPHYT_RS28245
plot