Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28195 and BPHYT_RS28200 are separated by 101 nucleotidesBPHYT_RS28200 and BPHYT_RS28205 are separated by 92 nucleotidesBPHYT_RS28205 and BPHYT_RS28210 overlap by 8 nucleotidesBPHYT_RS28210 and BPHYT_RS28215 overlap by 4 nucleotides BPHYT_RS28195: BPHYT_RS28195 - hypothetical protein, at 1,884,524 to 1,884,850 _RS28195 BPHYT_RS28200: BPHYT_RS28200 - sugar ABC transporter substrate-binding protein, at 1,884,952 to 1,885,959 _RS28200 BPHYT_RS28205: BPHYT_RS28205 - ATPase, at 1,886,052 to 1,887,068 _RS28205 BPHYT_RS28210: BPHYT_RS28210 - ATPase, at 1,887,061 to 1,888,119 _RS28210 BPHYT_RS28215: BPHYT_RS28215 - D-ribose transporter ATP binding protein, at 1,888,116 to 1,889,645 _RS28215
Group Condition BPHYT_RS28195 BPHYT_RS28200 BPHYT_RS28205 BPHYT_RS28210 BPHYT_RS28215
carbon source L-Rhamnose (C) N.D. -1.1 -0.9 N.D. -1.1
tn7 efficiency Outgrowth after Tn7 transformation N.D. -1.3 -0.3 N.D. -0.1
phage 36hr PHYTO2 MOI 1 N.D. -1.2 -0.3 N.D. +0.3
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent N.D. -1.1 +0.3 N.D. -0.3
phage 24hr PHYTO11 MOI 0.1 N.D. -0.9 -0.9 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 +0.8 N.D. -0.2
phage 24hr PHYTO10 MOI 1 N.D. -0.5 -0.9 N.D. +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 +0.8 N.D. -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -1.7 +1.0 N.D. +0.1
phage 36hr PHYTO11 MOI 1 N.D. +0.2 -1.3 N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.3 +0.9 N.D. +0.1
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. +0.8 +0.1 N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 -0.6 N.D. +1.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.8 +0.8 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.1 -0.4 N.D. +1.4
phage 36hr PHYTO6 MOI 0.1 N.D. +0.7 -0.4 N.D. +0.7
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. +1.0 -0.9 N.D. +1.0
supernatant control Vogels_fungal_media 0.1X N.D. -0.3 +0.3 N.D. +1.1
phage 36hr PHYTO2 MOI 1 N.D. +0.9 -0.6 N.D. +0.8
phage 24hr PHYTO6 MOI 10 N.D. +1.1 -0.5 N.D. +0.5
phage 24hr PHYTO9 MOI 0.1 N.D. +0.7 -0.3 N.D. +0.8
phage 24hr PHYTO9 MOI 10 N.D. +1.2 -0.4 N.D. +0.4
phage 36hr PHYTO4 MOI 1 N.D. +1.0 -0.1 N.D. +0.6
phage 36hr PHYTO6 MOI 1 N.D. +0.6 -0.3 N.D. +1.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +2.0 -0.3 N.D. +0.1
nophagecontrol 36hr Phyto Lib Only N.D. +0.4 +0.3 N.D. +1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.7 +0.0 N.D. +1.4
carbon source Malonic (C) N.D. -0.0 +0.1 N.D. +2.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +3.6 -0.2 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.0 +0.3 N.D. +6.3
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