Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS28070 and BPHYT_RS28075 are separated by 133 nucleotidesBPHYT_RS28075 and BPHYT_RS28080 are separated by 195 nucleotidesBPHYT_RS28080 and BPHYT_RS28085 are separated by 398 nucleotidesBPHYT_RS28085 and BPHYT_RS28090 are separated by 70 nucleotides BPHYT_RS28070: BPHYT_RS28070 - adenine permease, at 1,861,012 to 1,862,313 _RS28070 BPHYT_RS28075: BPHYT_RS28075 - cytochrome B561, at 1,862,447 to 1,862,977 _RS28075 BPHYT_RS28080: BPHYT_RS28080 - hypothetical protein, at 1,863,173 to 1,863,463 _RS28080 BPHYT_RS28085: BPHYT_RS28085 - Fis family transcriptional regulator, at 1,863,862 to 1,865,853 _RS28085 BPHYT_RS28090: BPHYT_RS28090 - ferredoxin, at 1,865,924 to 1,866,235 _RS28090
Group Condition BPHYT_RS28070 BPHYT_RS28075 BPHYT_RS28080 BPHYT_RS28085 BPHYT_RS28090
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 -2.5 N.D. +0.0 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -1.2 N.D. -0.1 -1.3
nitrogen source L-Glutamic (N) -0.2 -2.5 N.D. -0.5 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -3.0 N.D. +0.9 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -1.4 N.D. +0.1 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -1.7 N.D. -0.0 -0.6
carbon source D-Glucose (C) +0.1 -1.8 N.D. +0.0 -0.6
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.6 -0.9 N.D. -0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.0 -1.8 N.D. +0.0 +0.4
phage 36hr PHYTO10 MOI 10 +0.3 -2.4 N.D. +0.8 +0.1
phage 36hr PHYTO2 MOI 0.1 -0.3 -0.6 N.D. +1.0 +0.4
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.5 +0.6 N.D. +0.8 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 +0.3 N.D. -0.4 +1.4
carbon source Suberic (C) -0.1 +2.0 N.D. -0.4 -0.9
vitamin With vitamins t1 -0.2 +1.5 N.D. -0.2 -0.5
phage 24hr PHYTO8 MOI 1 -1.0 +1.6 N.D. +0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.7 N.D. +1.1 +0.5
phage P. phyto PHYTO2 MOI 1 -0.5 +1.2 N.D. +0.7 -0.3
carbon source Dodecandioic (C) +0.3 +1.5 N.D. -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +1.1 N.D. +0.8 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +1.6 N.D. -0.4 +0.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.6 +1.7 N.D. +0.5 +0.2
phage 24hr PHYTO11 MOI 1 -0.2 +0.8 N.D. +0.4 +0.9
phage 36hr PHYTO2 MOI 1 -0.2 +0.9 N.D. +0.7 +0.5
phage 24hr PHYTO9 MOI 10 +0.1 +1.0 N.D. +0.6 +0.8
phage 24hr PHYTO3 MOI 10 -0.2 +1.5 N.D. +0.5 +0.8
carbon source Suberic (C) +0.1 +1.9 N.D. +0.7 -0.1
phage 36hr PHYTO8 MOI 10 +0.0 +1.2 N.D. +0.8 +0.5
carbon source adipate (C) +0.1 +1.4 N.D. +0.3 +0.9
carbon source Sebacic (C) -0.0 +2.0 N.D. +0.4 +0.4
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