Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS28055	BPHYT_RS28060	BPHYT_RS28065	BPHYT_RS28070	BPHYT_RS28075
supernatant control	Vogels_fungal_media; pH 5.5	-1.5	-0.5	-2.8	-0.1	-0.6
supernatant control	Vogels_fungal_media 0.1X	-0.2	-0.5	-2.5	-0.0	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.5	+0.1	-2.5	-0.2	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	-0.3	-1.8	-0.5	-1.2
phage	36hr PHYTO8 MOI 0.1	-0.9	-0.1	-1.5	-0.4	-0.5
phage	24hr PHYTO MOI 0.1	-2.2	+0.1	-0.1	-0.3	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	-0.5	-0.5	-2.1	+0.1	+0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.1	-0.5	-1.0	+0.6	-0.9
phage	36hr PHYTO6 MOI 0.1	-0.6	-0.2	-1.7	-0.5	+0.2
carbon source	D-Glucose (C)	+0.4	-0.3	-1.5	-0.1	-1.3
nitrogen source	L-Glutamic (N)	-0.5	-0.2	+0.7	-0.2	-2.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.2	-2.9	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.4	+0.0	-0.1	-3.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+0.0	-1.8	+0.0	-1.0
carbon source	Tween 20 (C)	-1.6	+0.3	-1.5	-0.1	+0.8
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.5	+0.0	-3.1	+0.2	+1.7
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.0	+0.1	+0.7	+0.1	-2.5
phage	36hr PHYTO7 MOI 1	-2.1	-0.2	+1.2	-0.1	-0.3
carbon source	D-Glucose (C)	-0.4	-0.3	-1.5	-0.4	+1.0
phage	36hr PHYTO10 MOI 10	-0.0	-0.1	+0.8	+0.3	-2.4
carbon source	Malonic (C)	-1.5	-0.1	-0.4	-0.1	+1.4
nophagecontrol	24hr Phyto Lib only	-1.4	+0.4	-0.1	-0.4	+0.9
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.9	-0.3	+1.2	-0.4	+0.4
phage	24hr PHYTO4 MOI 0.1	-1.5	+0.0	+1.9	-0.2	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.7	-0.2	+0.5	-0.6	+1.7
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+1.8	-0.3	+0.4	-0.0	-0.8
phage	36hr PHYTO6 MOI 10	-1.4	+0.2	+1.6	-0.2	+0.9
phage	24hr PHYTO8 MOI 1	-0.5	+0.1	+1.6	-1.0	+1.6
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.5	+0.1	+1.1	-0.1	+1.6
carbon source	Sebacic (C)	-0.5	+0.2	+0.6	-0.0	+2.0