Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS28035	BPHYT_RS28040	BPHYT_RS28045	BPHYT_RS28050	BPHYT_RS28055
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	N.D.	-2.0	-0.6	-0.3	-0.6
carbon source	Tween 20 (C)	N.D.	-1.4	+0.2	-0.7	-1.6
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-1.1	+0.0	-0.4	-1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.1	-0.2	+0.1	-1.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.7	-0.4	-0.7	-0.5
phage	24hr PHYTO MOI 0.1	N.D.	-0.3	+0.1	+0.2	-2.2
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.2	-0.6	-0.5	-1.1
motility	inner cut, LB soft agar motility assay	N.D.	-0.7	-0.2	-0.1	-1.1
phage	24hr PHYTO MOI 0.1	N.D.	-0.9	-0.6	+0.4	-0.9
phage	24hr PHYTO4 MOI 0.1	N.D.	-0.2	-0.4	+0.3	-1.5
carbon source	Malonic (C)	N.D.	+0.1	-0.3	-0.1	-1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.1	-0.1	+0.2	-0.8
phage	36hr PHYTO7 MOI 1	N.D.	+0.5	-0.2	+0.0	-2.1
phage	36hr PHYTO3 MOI 1	N.D.	+0.3	+0.2	-0.1	-1.9
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-0.1	+0.6	-0.6	-1.1
nitrogen source	Uridine (N)	N.D.	-0.3	-0.6	+0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-1.3	-0.3	+0.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.9	-0.6	-0.0	+0.5
phage	36hr PHYTO6 MOI 10	N.D.	+0.1	-0.1	+0.4	-1.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	-1.2	+0.7	+0.1	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.9	-0.3	-0.4	-0.9
phage	24hr PHYTO10 MOI 10	N.D.	-0.4	-0.6	+0.2	+0.7
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	N.D.	-0.4	-0.3	-0.3	+1.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	-0.4	+0.5	+0.6	-0.5
phage	36hr PHYTO3 MOI 0.1	N.D.	+0.5	+0.2	+0.5	-0.9
phage	P. phyto PHYTO2 MOI 0.1	N.D.	+0.5	-0.2	-0.4	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.3	+0.7	+0.4	+0.9
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	N.D.	+0.1	-0.3	+0.0	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.5	+0.2	+1.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	+0.9	+0.9	+0.0