Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS27820 and BPHYT_RS27825 are separated by 1 nucleotidesBPHYT_RS27825 and BPHYT_RS27830 are separated by 138 nucleotidesBPHYT_RS27830 and BPHYT_RS27835 are separated by 352 nucleotidesBPHYT_RS27835 and BPHYT_RS27840 overlap by 1 nucleotides BPHYT_RS27820: BPHYT_RS27820 - membrane protein, at 1,804,574 to 1,805,005 _RS27820 BPHYT_RS27825: BPHYT_RS27825 - hypothetical protein, at 1,805,007 to 1,805,441 _RS27825 BPHYT_RS27830: BPHYT_RS27830 - universal stress protein A, at 1,805,580 to 1,806,533 _RS27830 BPHYT_RS27835: BPHYT_RS27835 - polysaccharide deacetylase, at 1,806,886 to 1,807,734 _RS27835 BPHYT_RS27840: BPHYT_RS27840 - GTP-binding protein, at 1,807,734 to 1,808,990 _RS27840
Group Condition BPHYT_RS27820 BPHYT_RS27825 BPHYT_RS27830 BPHYT_RS27835 BPHYT_RS27840
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. N.D. -1.0 -0.6 -0.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -0.3 -0.5 -0.6
supernatant control Vogels_fungal_media 0.1X N.D. N.D. -0.9 -0.5 -0.0
vitamin No vitamins t1 N.D. N.D. -1.0 -0.4 -0.0
vitamin With vitamins t1 N.D. N.D. -1.0 -0.3 +0.0
lb_dap plate control LB_DAP agar plate, outgrowth in LB N.D. N.D. -0.5 -0.6 -0.1
phage 36hr PHYTO4 MOI 1 N.D. N.D. +0.2 -0.5 -0.7
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.8 +0.6 -0.6
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. N.D. -1.1 +0.1 +0.2
phage 24hr PHYTO6 MOI 1 N.D. N.D. +0.4 -0.5 -0.4
phage 24hr PHYTO3 MOI 10 N.D. N.D. +0.8 -0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.2 -0.5 -0.7
carbon source D,L-Lactate (C) N.D. N.D. +0.7 -0.3 -0.3
carbon source adipate (C) N.D. N.D. +0.6 -0.7 +0.2
phage 36hr PHYTO4 MOI 1 N.D. N.D. +0.9 -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -0.8 +1.0 +0.2
carbon source Suberic (C) N.D. N.D. +0.8 -0.6 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +1.0 -0.3 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. +0.6 -0.2 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +1.0 +0.3 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.8 -0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.4 -0.1 +0.0
carbon source propionate (C) N.D. N.D. +0.6 +0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. +0.3 +0.4 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +0.6 +0.5 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +1.5 +0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. +0.0 +0.8 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +1.1 +0.4 +0.2
phage 36hr PHYTO8 MOI 10 N.D. N.D. +1.0 +0.4 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days N.D. N.D. +0.6 +0.6 +0.6
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BPHYT_RS27825
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