Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS27785	BPHYT_RS27790	BPHYT_RS27795	BPHYT_RS27800	BPHYT_RS27805
phage	36hr PHYTO3 MOI 1	-0.0	-0.4	+0.0	-2.6	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.8	+0.1	-0.6	-0.9	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	-0.4	-0.3	-0.8	-1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.1	-0.3	-0.3	-0.6	-1.1
phage	24hr PHYTO11 MOI 0.1	+0.3	+0.0	-0.6	-1.5	-0.6
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-1.7	+0.4	-0.2	-0.4	-0.5
phage	36hr PHYTO4 MOI 1	+0.6	+0.0	-0.3	-1.3	-0.8
phage	P. phyto PHYTO2 MOI 1	+1.0	-0.1	-0.4	-1.7	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2	+0.2	-0.3	-0.6	+0.4
phage	24hr PHYTO9 MOI 10	-0.1	-0.4	-0.7	-1.0	+0.8
phage	36hr PHYTO8 MOI 10	+0.6	-0.0	-0.4	-0.2	-1.1
nitrogen source	D-Alanine (N)	+0.9	-0.4	-0.3	-1.0	-0.1
carbon source	Azelaic (C)	+0.3	-0.3	-0.5	-0.9	+0.6
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.0	-0.9	-0.6	+0.9	-0.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-1.3	+0.6	+0.0	-0.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.1	-0.0	-1.2	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.0	+0.7	-0.4	-1.0	+0.5
supernatant control	Vogels_fungal_media; pH 5.5	-0.8	-0.4	+0.1	+1.0	+0.2
carbon source	Protocatechuic Acid (C)	+0.4	-0.4	-0.1	-0.6	+1.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	+1.2	+0.4	-1.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.6	+0.5	-0.9	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.4	-0.0	-0.4	-0.1	+1.7
carbon source	Disodium Glutarate (C)	+1.2	-0.5	-0.0	-0.3	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.4	+0.2	-0.3	+1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.5	-0.3	+0.5	-0.6	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.5	+0.3	+0.9	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+1.2	+0.4	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+1.2	+0.5	-0.7	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.3	+0.0	+0.4	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.0	+0.9	+0.5	+0.0	+0.5