Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS27645 and BPHYT_RS27650 are separated by 58 nucleotidesBPHYT_RS27650 and BPHYT_RS27655 are separated by 436 nucleotidesBPHYT_RS27655 and BPHYT_RS27660 are separated by 110 nucleotidesBPHYT_RS27660 and BPHYT_RS27665 are separated by 22 nucleotides BPHYT_RS27645: BPHYT_RS27645 - universal stress protein UspA, at 1,770,518 to 1,770,976 _RS27645 BPHYT_RS27650: BPHYT_RS27650 - hypothetical protein, at 1,771,035 to 1,771,382 _RS27650 BPHYT_RS27655: BPHYT_RS27655 - potassium transporter, at 1,771,819 to 1,772,652 _RS27655 BPHYT_RS27660: BPHYT_RS27660 - hypothetical protein, at 1,772,763 to 1,773,203 _RS27660 BPHYT_RS27665: BPHYT_RS27665 - flavodoxin, at 1,773,226 to 1,773,738 _RS27665
Group Condition BPHYT_RS27645 BPHYT_RS27650 BPHYT_RS27655 BPHYT_RS27660 BPHYT_RS27665
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. N.D. -3.1 -0.1 N.D.
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -2.9 -0.2 N.D.
phage 36hr PHYTO11 MOI 1 N.D. N.D. -1.4 -1.6 N.D.
phage 36hr PHYTO1 MOI 10 N.D. N.D. -2.3 -0.4 N.D.
phage 24hr PHYTO6 MOI 0.1 N.D. N.D. -2.2 -0.2 N.D.
phage 24hr PHYTO2 MOI 1 N.D. N.D. -2.3 -0.1 N.D.
phage 36hr PHYTO2 MOI 1 N.D. N.D. -2.1 -0.0 N.D.
carbon source Phenylacetic 5 mM (C) N.D. N.D. -0.8 -1.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.8 -0.1 N.D.
phage 36hr PHYTO2 MOI 0.1 N.D. N.D. -2.3 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. N.D. -1.0 -0.8 N.D.
phage 24hr PHYTO2 MOI 0.1 N.D. N.D. -2.3 +0.6 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.5 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.6 -0.1 N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. -0.9 -0.7 N.D.
nitrogen source L-Lysine (N) N.D. N.D. -1.1 -0.5 N.D.
phage 24hr PHYTO3 MOI 10 N.D. N.D. -1.5 +0.1 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. -1.6 +0.3 N.D.
nitrogen source NAG (N) N.D. N.D. -1.5 +0.4 N.D.
nitrogen source L-Citrulline (N) N.D. N.D. -1.1 +0.6 N.D.
phage 36hr PHYTO6 MOI 0.1 N.D. N.D. -1.4 +1.1 N.D.
carbon source Protocatechuic Acid (C) N.D. N.D. +0.9 -0.9 N.D.
phage 36hr PHYTO6 MOI 0.1 N.D. N.D. -0.7 +0.9 N.D.
carbon source Suberic (C) N.D. N.D. +1.0 -0.8 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.7 -0.9 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. +1.7 -0.6 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +1.6 -0.3 N.D.
carbon source Malonic (C) N.D. N.D. +1.5 +0.1 N.D.
phage 36hr PHYTO8 MOI 0.1 N.D. N.D. +1.0 +0.7 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 N.D. N.D. +1.0 +0.9 N.D.
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