Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS27560	BPHYT_RS27565	BPHYT_RS27570	BPHYT_RS27575	BPHYT_RS27580
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	-0.1	-4.0	-0.0	-0.9
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-4.3	-0.2	+0.6	+0.6	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.6	-0.0	-2.5	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.5	+0.2	-1.1	-0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	-0.0	-1.8	+0.3	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-1.3	-0.5	-0.4	-0.3	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.0	-2.5	+0.2	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.0	-0.5	-0.3	+0.7	-0.7
phage	PHYTO3 MOI 0.1	-2.0	+0.3	-0.4	+0.0	+0.4
phage	36hr PHYTO11 MOI 0.1	-1.5	+0.0	-0.8	+0.4	+0.6
nophagecontrol	36hr Phyto Lib Only	-2.5	+0.2	+0.5	-0.2	+0.7
phage	24hr PHYTO9 MOI 0.1	+0.8	+0.3	-1.1	-0.7	-0.4
phage	36hr PHYTO8 MOI 10	-2.2	-0.0	+0.5	+0.4	+0.3
phage	36hr PHYTO11 MOI 0.1	-0.6	+0.4	-1.0	-0.3	+0.8
nitrogen source	L-Serine (N)	-0.5	-0.4	+1.1	+0.2	-1.0
phage	36hr PHYTO6 MOI 0.1	-2.3	+0.3	+0.9	+0.1	+0.5
phage	24hr PHYTO4 MOI 10	-1.6	+0.3	+0.8	+0.4	+0.1
phage	P. phyto PHYTO2 MOI 1	-1.2	+0.4	+1.4	+0.1	-0.4
phage	36hr PHYTO10 MOI 10	-1.2	-0.0	+0.8	+0.9	-0.0
phage	24hr PHYTO2 MOI 1	-1.2	+0.2	+0.7	+0.3	+0.9
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.3	-0.3	-0.1	-0.8	+2.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	+0.0	-0.8	-0.9	+2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-0.5	+0.8	-0.4	+2.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.6	-0.0	+2.5	-0.1	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.2	+0.1	-0.4	+1.9
nitrogen source	Putrescine (N)	+0.8	-0.0	+1.8	-0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+0.1	-0.2	-0.0	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-0.1	+1.4	-0.8	+1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.2	-0.6	+1.1	-0.3	+2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.3	+0.8	-0.4	+2.9