Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS27545	BPHYT_RS27555	BPHYT_RS27560	BPHYT_RS27565	BPHYT_RS27570
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.8	-0.2	-1.2	-0.1	-4.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.3	-0.0	-4.3	-0.2	+0.6
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	-0.1	-0.5	+0.0	-2.5
carbon source	Tween 20 (C)	-1.0	-0.1	+0.0	+0.0	-2.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.2	-0.8	-0.1	-1.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.3	-0.8	-0.0	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.3	-1.5	+0.2	-1.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	+0.3	-0.1	-0.4	-1.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.3	-1.3	-0.5	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.9	+0.2	-0.6	-0.0	-2.5
phage	PHYTO3 MOI 0.1	+0.2	-0.1	-2.0	+0.3	-0.4
nophagecontrol	36hr Phyto Lib Only	+0.2	+0.0	-2.5	+0.2	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	+0.3	-1.6	-0.0	+0.5
phage	36hr PHYTO8 MOI 10	-0.1	+0.6	-2.2	-0.0	+0.5
phage	24hr PHYTO9 MOI 0.1	-0.4	-0.4	+0.8	+0.3	-1.1
phage	P. phyto PHYTO2 MOI 1	-0.7	-0.3	-1.2	+0.4	+1.4
phage	36hr PHYTO6 MOI 0.1	+0.7	+0.2	-2.3	+0.3	+0.9
phage	36hr PHYTO11 MOI 0.1	+0.3	+0.6	-0.6	+0.4	-1.0
phage	24hr PHYTO4 MOI 10	+0.3	+0.1	-1.6	+0.3	+0.8
nophagecontrol	24hr Phyto Lib Only	+0.5	-0.2	-1.5	+0.6	+0.5
phage	36hr PHYTO10 MOI 10	+0.5	+0.5	-1.2	-0.0	+0.8
motility	outer cut, LB soft agar motility assay	+0.8	+0.2	+0.8	+0.0	-1.0
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+1.1	-0.1	+0.7	+0.4	-1.1
phage	36hr PHYTO6 MOI 0.1	+0.6	+0.3	-1.0	+0.6	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.1	+0.5	-0.1	+1.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	+0.2	+1.2	-0.6	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.1	-0.6	-0.0	+2.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.1	+0.4	+0.5	+1.8
phage	36hr PHYTO3 MOI 1	+1.0	+0.0	+0.9	+0.8	+0.0
nitrogen source	Putrescine (N)	+0.4	+0.4	+0.8	-0.0	+1.8