Fitness for 5 genes in Burkholderia phytofirmans PsJN

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

500 ntBPHYT_RS27375 and BPHYT_RS27380 are separated by 8 nucleotidesBPHYT_RS27380 and BPHYT_RS27385 are separated by 200 nucleotidesBPHYT_RS27385 and BPHYT_RS27390 are separated by 281 nucleotidesBPHYT_RS27390 and BPHYT_RS27395 are separated by 25 nucleotides BPHYT_RS27375: BPHYT_RS27375 - shikimate 5-dehydrogenase, at 1,715,734 to 1,716,567 _RS27375 BPHYT_RS27380: BPHYT_RS27380 - 3-dehydroquinate dehydratase, at 1,716,576 to 1,716,683 _RS27380 BPHYT_RS27385: BPHYT_RS27385 - DeoR family transcriptional regulator, at 1,716,884 to 1,718,365 _RS27385 BPHYT_RS27390: BPHYT_RS27390 - hydroxyacid dehydrogenase, at 1,718,647 to 1,719,708 _RS27390 BPHYT_RS27395: BPHYT_RS27395 - N-acetyltransferase GCN5, at 1,719,734 to 1,720,636 _RS27395
Group Condition BPHYT_RS27375 BPHYT_RS27380 BPHYT_RS27385 BPHYT_RS27390 BPHYT_RS27395
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 N.D. -0.2 -2.4 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.4 N.D. -0.5 +0.3 -1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 N.D. -0.2 -0.7 -1.1
carbon source L-Fucose (C) -0.2 N.D. -0.4 -0.8 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.6 N.D. +0.1 -0.3 -1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 N.D. -0.1 +0.4 -1.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 N.D. -0.5 -1.2 -0.3
carbon source Malonic (C) +0.2 N.D. +0.6 -0.8 -1.0
nitrogen source L-Lysine (N) +0.3 N.D. +0.5 -0.8 -0.6
phage 24hr PHYTO9 MOI 0.1 -0.2 N.D. +0.7 +0.2 -1.0
phage 36hr PHYTO3 MOI 0.1 -0.3 N.D. +0.7 -1.0 +0.3
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.6 N.D. +0.8 -1.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. -0.3 -0.7 +1.1
nutrient casaminos -0.1 N.D. +0.3 -1.1 +1.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.7 N.D. +0.3 -1.1 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 N.D. -0.5 +1.0 +0.4
supernatant control Vogels_fungal_media; pH 5.5 +0.5 N.D. +0.4 -1.1 +0.8
vitamin No vitamins t1 -0.8 N.D. +0.2 +0.5 +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 N.D. -0.3 -0.4 +1.2
vitamin With vitamins t1 -0.7 N.D. +0.1 +0.9 +0.6
phage PHYTO3 MOI 0.1 -0.0 N.D. -0.6 +0.6 +0.9
phage 24hr PHYTO3 MOI 10 -0.2 N.D. -0.2 +0.5 +1.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 N.D. +0.1 +1.5 +0.5
carbon source Tween 20 (C) +0.1 N.D. -0.0 +1.5 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days +0.6 N.D. +0.2 -0.2 +1.6
carbon source adipate (C) +0.2 N.D. +0.3 +0.7 +1.3
carbon source D-Glucose (C) -0.0 N.D. +0.5 +1.7 +0.4
carbon source Suberic (C) +0.6 N.D. +0.5 +0.5 +1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days +0.2 N.D. +0.5 +0.3 +1.7
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB +0.7 N.D. +0.7 +0.9 +0.7
remove
BPHYT_RS27375
plot		 remove
BPHYT_RS27380
plot		 remove
BPHYT_RS27385		 remove
BPHYT_RS27390
plot		 remove
BPHYT_RS27395
plot