Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

Or view all 321 experiments or choose conditions or try the comparative fitness browser

Group	Condition	BPHYT_RS27295	BPHYT_RS27300	BPHYT_RS27305	BPHYT_RS27310	BPHYT_RS27315
phage	P. phyto PHYTO2 MOI 1	-1.7	-0.4	-1.8	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-3.3	-0.1	-1.3	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.9	+0.0	-1.2	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-3.2	-0.1	-0.5	N.D.	+0.1
nitrogen source	L-Lysine (N)	-3.4	+0.1	+0.3	N.D.	-0.4
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.4	-0.2	-2.9	N.D.	-0.1
phage	24hr PHYTO6 MOI 0.1	-1.9	-0.3	-0.5	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.6	-0.4	-0.5	N.D.	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.2	+0.1	-0.5	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-0.4	-1.3	N.D.	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.3	+0.6	-1.1	N.D.	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-1.4	+0.0	-1.2	N.D.	+0.2
phage	P. phyto corn MOI 1	-2.8	+0.2	+0.3	N.D.	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.6	+0.4	-0.7	N.D.	-0.1
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-2.3	+0.1	+0.6	N.D.	-0.3
phage	24hr PHYTO3 MOI 10	-1.0	+0.4	-1.5	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-4.1	-0.1	+2.7	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-2.0	+0.1	+0.5	N.D.	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	+0.6	+0.5	-2.4	N.D.	-0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.2	+0.2	-2.0	N.D.	+0.6
phage	PHYTO3 MOI 0.1	+0.8	+0.1	-1.6	N.D.	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.6	+0.5	-0.3	N.D.	+0.4
nitrogen source	L-Glutamine (N)	-1.4	+0.0	+1.0	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.5	+0.3	+0.8	N.D.	-0.3
phage	24hr PHYTO2 MOI 1	+1.3	-0.0	-1.3	N.D.	+0.1
phage	36hr PHYTO10 MOI 1	-0.8	+0.7	+1.0	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	+0.1	+1.3	N.D.	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.4	+0.5	+1.5	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	+1.5	+1.4	N.D.	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+1.9	+0.5	+1.2	N.D.	-0.3