Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS27255	BPHYT_RS27260	BPHYT_RS27265	BPHYT_RS27270	BPHYT_RS27275
phage	24hr PHYTO11 MOI 0.1	N.D.	N.D.	-0.5	-0.9	-0.4
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	N.D.	-0.2	-1.4	-0.0
phage	24hr PHYTO11 MOI 1	N.D.	N.D.	+0.0	-1.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	N.D.	-0.3	-1.1	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	N.D.	+0.1	-0.8	-0.7
lb_dap plate control	LB_DAP agar plate, outgrowth in LB	N.D.	N.D.	-0.4	-0.9	+0.2
nitrogen source	L-Serine (N)	N.D.	N.D.	+0.3	-1.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.4	-1.4	+0.0
phage	36hr PHYTO7 MOI 1	N.D.	N.D.	-0.3	+0.4	-1.0
r2a control	R2A control	N.D.	N.D.	-0.2	-0.9	+0.3
nophagecontrol	36hr Phyto Lib Only	N.D.	N.D.	+0.3	-1.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.0	+0.7	-0.7
carbon source	succinate (C)	N.D.	N.D.	+0.3	-0.9	+0.6
carbon source	Malonic (C)	N.D.	N.D.	+0.9	-0.5	-0.1
phage	24hr PHYTO6 MOI 10	N.D.	N.D.	-0.5	+0.8	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	N.D.	-0.3	+0.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	N.D.	+0.9	-0.3	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	N.D.	-0.2	+1.2	+0.2
phage	36hr PHYTO1 MOI 10	N.D.	N.D.	-0.2	+0.8	+0.6
phage	24hr PHYTO3 MOI 0.1	N.D.	N.D.	-0.2	+1.0	+0.4
motility	outer cut, LB soft agar motility assay	N.D.	N.D.	+0.6	+0.7	-0.0
supernatant control	Vogels_fungal_media 0.1X	N.D.	N.D.	-0.1	+1.1	+0.3
phage	36hr PHYTO10 MOI 10	N.D.	N.D.	+0.1	+0.7	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	N.D.	+0.1	+0.9	+0.4
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	N.D.	-0.2	+0.5	+1.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	N.D.	-0.3	+1.6	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	N.D.	+0.4	+1.1	+0.3
nophagecontrol	36hr Phyto Lib only	N.D.	N.D.	+0.3	+1.2	+0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	N.D.	-0.1	+1.6	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	N.D.	-0.3	+4.5	-0.1