Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS27180	BPHYT_RS27185	BPHYT_RS27190	BPHYT_RS27195	BPHYT_RS27200
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-1.6	+0.1	+0.3	-0.1	-0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.5	-0.2	-0.4	+0.1	+0.1
in planta	Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.5	+0.2	-0.6	+0.1	+0.1
phage	36hr PHYTO6 MOI 0.1	-0.3	-0.3	-1.5	+0.5	+0.0
phage	36hr PHYTO1 MOI 10	-0.0	-0.5	-0.7	+0.5	-0.7
phage	24hr PHYTO6 MOI 10	-1.0	-0.1	-1.0	+1.0	-0.2
carbon source	Dodecandioic (C)	-0.5	+0.2	+0.4	-0.7	-0.6
phage	36hr PHYTO2 MOI 1	-0.1	-0.5	-0.8	+0.8	-0.6
motility	inner cut, LB soft agar motility assay	-0.7	-0.2	-0.7	+0.9	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.6	-0.8	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.8	+0.1	-0.5	+0.7	-0.3
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	-1.4	-0.2	-0.4	+0.3	+0.8
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.5	-0.1	+0.7	-0.3	+0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.3	-0.6	-0.8	+0.6	+0.5
carbon source	Phenylacetic 5 mM (C)	+0.4	-0.5	+0.2	+0.4	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.2	-0.1	-0.5	+0.6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.5	-0.0	-0.2	+1.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	-0.2	-0.5	+0.4	+0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.7	+0.5	+0.7	-0.3	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-1.4	+0.1	+0.0	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	+0.1	-0.2	+0.5	+0.6
phage	36hr PHYTO8 MOI 10	-0.7	+0.3	-0.4	+0.9	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	-0.3	-0.7	+0.7	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.4	+0.2	+1.0	-0.7	+0.1
carbon source	adipate (C)	+1.1	-0.3	-0.1	+0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.0	+0.3	+0.8	+1.0
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.2	-0.2	+0.9	+0.6	+0.3
carbon source	Malonic (C)	+0.0	-0.1	-0.6	+2.1	+0.4
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.4	+0.0	+0.7	+0.9	+0.8
carbon source	Suberic (C)	+0.6	-0.2	+0.4	+1.0	+0.2