Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS27160	BPHYT_RS27165	BPHYT_RS27170	BPHYT_RS27175	BPHYT_RS27180
phage	24hr PHYTO3 MOI 10	-4.4	+0.1	-0.2	-0.4	-0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.4	+0.3	-4.5	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.4	+0.1	-0.3	-2.9	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.2	+0.0	+0.0	-2.9	+0.7
phage	P. phyto PHYTO2 MOI 1	-4.2	+0.5	-0.1	-0.7	+0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	-0.1	+0.6	-0.3	-3.0	-1.4
phage	36hr PHYTO4 MOI 0.1	-2.7	-0.3	-0.4	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	-0.0	+0.1	-1.7	-0.8
phage	36hr PHYTO10 MOI 10	-1.3	+0.3	-1.2	-1.0	-0.1
carbon source	D-Fructose (C)	-0.0	-0.1	+0.1	-2.5	-0.7
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-1.1	+0.4	+0.1	-2.6	+0.4
phage	36hr PHYTO3 MOI 0.1	-2.8	-0.1	+0.4	-0.2	+0.1
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.5	+0.1	+0.1	-2.5	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.6	+0.1	-3.0	-0.2
carbon source	Tween 20 (C)	-0.6	+0.2	+0.4	-2.3	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+1.4	-0.1	-0.2	-3.0	-0.3
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.6	+0.2	-0.4	-1.7	-0.7
phage	36hr PHYTO10 MOI 1	-2.8	+0.1	+0.3	+0.7	+0.1
phage	36hr PHYTO11 MOI 1	-1.9	-0.4	-0.2	+1.0	-0.0
phage	24hr PHYTO3 MOI 1	-1.9	+0.0	-0.0	+1.2	-0.6
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.9	+0.3	-0.4	-2.0	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-1.0	+1.4	-0.1	-0.6	-0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+1.4	+0.1	-0.5	-1.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.7	+1.6	+0.1	+0.4	-0.8
carbon source	Suberic (C)	-1.1	-0.0	-0.1	+1.8	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	-0.2	+0.1	+0.5	+1.9	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.3	+0.1	+2.1	-1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.1	+0.4	+0.4	+2.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	+0.5	+0.1	+0.4	+2.6	-0.5
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.3	-0.2	+0.1	+3.4	-0.3