Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26980 and BPHYT_RS26985 are separated by 93 nucleotidesBPHYT_RS26985 and BPHYT_RS26990 are separated by 376 nucleotidesBPHYT_RS26990 and BPHYT_RS26995 are separated by 183 nucleotidesBPHYT_RS26995 and BPHYT_RS27000 are separated by 187 nucleotides BPHYT_RS26980: BPHYT_RS26980 - HipA protein, at 1,630,489 to 1,631,808 _RS26980 BPHYT_RS26985: BPHYT_RS26985 - XRE family transcriptional regulator, at 1,631,902 to 1,632,144 _RS26985 BPHYT_RS26990: BPHYT_RS26990 - GntR family transcriptional regulator, at 1,632,521 to 1,633,267 _RS26990 BPHYT_RS26995: BPHYT_RS26995 - peptidase S10, at 1,633,451 to 1,635,223 _RS26995 BPHYT_RS27000: BPHYT_RS27000 - aspartate aminotransferase, at 1,635,411 to 1,636,589 _RS27000
Group Condition BPHYT_RS26980 BPHYT_RS26985 BPHYT_RS26990 BPHYT_RS26995 BPHYT_RS27000
phage 36hr PHYTO1 MOI 10 -0.2 N.D. -1.4 +0.1 -0.8
phage 36hr PHYTO10 MOI 10 -0.9 N.D. -1.5 +0.3 -0.1
phage 24hr PHYTO4 MOI 10 -0.9 N.D. -1.1 +0.1 -0.1
supernatant control Vogels_fungal_media 0.1X -0.3 N.D. -1.1 -0.1 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 N.D. -0.7 -0.7 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.7 N.D. -1.0 -0.2 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. -0.8 -0.6 -0.4
phage 24hr PHYTO1 MOI 10 -0.5 N.D. -1.2 +0.3 +0.1
phage 36hr PHYTO1 MOI 1 -0.2 N.D. -1.3 +0.1 +0.2
phage 36hr PHYTO11 MOI 0.1 +0.3 N.D. -0.0 -0.8 -0.7
phage 24hr PHYTO3 MOI 1 -0.3 N.D. -1.0 +0.6 -0.3
phage 36hr PHYTO1 MOI 10 -0.8 N.D. -0.6 +0.6 -0.0
phage 36hr PHYTO6 MOI 1 -0.6 N.D. +0.5 -0.3 -0.4
phage P. phyto PHYTO2 MOI 0.1 +0.1 N.D. -0.8 +0.3 -0.4
lb_dap plate control and outgrow on gent LB_DAP agar plate, outgrowth in LB_gent -0.2 N.D. -0.8 +0.4 -0.2
nophagecontrol 36hr Phyto Lib only -0.1 N.D. -1.2 +0.6 +0.1
phage 24hr PHYTO9 MOI 10 +0.3 N.D. -0.4 -0.7 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -0.8 +0.1 +0.4
phage 36hr PHYTO3 MOI 1 -0.3 N.D. -0.7 +0.8 -0.3
phage P. phyto PHYTO2 MOI 1 -1.3 N.D. +0.2 +0.7 -0.1
phage 36hr PHYTO9 MOI 0.1 -0.2 N.D. -0.8 +0.3 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. -0.6 +0.7 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. -0.2 +0.4 +0.6
phage 36hr PHYTO4 MOI 1 +0.5 N.D. -0.4 +0.6 -0.5
nophagecontrol 36hr Phyto Lib Only +0.4 N.D. -0.7 +0.4 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -0.2 N.D. +0.0 +1.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -0.5 +0.7 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.4 N.D. +0.3 +0.8 +0.2
vitamin With vitamins t2 +0.2 N.D. -0.3 +1.1 +0.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 N.D. +1.2 +0.2 +0.2
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