Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26950	BPHYT_RS26955	BPHYT_RS26960	BPHYT_RS26965	BPHYT_RS26970
carbon source	L-Lactate (C)	+0.3	-0.6	+0.0	-4.2	-5.3
carbon source	D,L-Lactate (C)	-0.1	-1.2	-0.0	-4.5	-1.8
carbon source	L-Fucose (C)	+0.4	+1.0	+0.3	-5.3	-2.6
nitrogen source	L-Alanine (N)	-0.0	-4.7	-0.4	+0.1	-0.4
carbon source	L-Rhamnose (C)	-0.2	-0.2	-0.5	-2.7	-1.7
carbon source	D,L-Lactate (C)	-0.2	-1.5	+0.7	-1.6	-1.6
carbon source	D,L-Lactate (C)	+0.1	-0.5	-0.4	-1.7	-1.6
carbon source	D-Glucose (C)	-0.3	-1.8	+0.1	-2.0	-0.0
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.0	-4.1	+0.4	-0.2	-0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-0.3	-1.8	+0.5	-2.1	-0.2
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.7	-1.6	-0.7	-0.5	-0.1
carbon source	D,L-Lactate (C)	+0.3	+0.4	-0.2	-1.9	-1.6
supernatant control	Vogels_fungal_media; pH 5.5	-0.5	-1.4	+0.4	-0.3	-0.8
carbon source	D,L-Lactate (C)	+0.0	+0.8	-0.5	-1.4	-1.2
nitrogen source	NAG (N)	+0.3	-2.9	+0.3	+0.4	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.7	+1.2	+0.7	-2.3	-0.3
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	-0.1	-2.4	+0.3	+0.4	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.3	+1.1	-3.0	+0.2
nitrogen source	L-Proline (N)	+0.6	-0.1	+0.4	-2.2	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.2	+1.5	-0.4	-2.5	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.8	+0.6	-1.0	-0.5
carbon source	Phenylacetic 5 mM (C)	-0.3	-2.0	-0.0	+1.5	+0.1
nitrogen source	L-Lysine (N)	+0.5	+0.9	-0.4	-1.4	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	-1.8	+0.9	+0.7	+0.4
phage	36hr PHYTO MOI 0.1	+0.2	+1.1	+0.0	-1.6	+0.5
nitrogen source	Putrescine (N)	+0.3	-1.3	+0.5	+1.2	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.3	-1.0	-0.2	+2.7	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.7	+2.5	+0.7	+0.1	-0.5
carbon source	D-Glucose (C)	+0.6	+1.8	+0.3	+0.9	+0.1
motility	inner cut, LB soft agar motility assay	+0.9	+1.4	+1.1	+0.7	+0.7