Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26885 and BPHYT_RS26890 are separated by 112 nucleotidesBPHYT_RS26890 and BPHYT_RS26895 are separated by 151 nucleotidesBPHYT_RS26895 and BPHYT_RS26900 are separated by 82 nucleotidesBPHYT_RS26900 and BPHYT_RS26905 are separated by 214 nucleotides BPHYT_RS26885: BPHYT_RS26885 - DSBA oxidoreductase, at 1,603,591 to 1,605,156 _RS26885 BPHYT_RS26890: BPHYT_RS26890 - LysR family transcriptional regulator, at 1,605,269 to 1,606,144 _RS26890 BPHYT_RS26895: BPHYT_RS26895 - nicotinate phosphoribosyltransferase, at 1,606,296 to 1,607,723 _RS26895 BPHYT_RS26900: BPHYT_RS26900 - isoprenylcysteine carboxyl methyltransferase, at 1,607,806 to 1,608,492 _RS26900 BPHYT_RS26905: BPHYT_RS26905 - pilus assembly protein CpaE, at 1,608,707 to 1,609,909 _RS26905
Group Condition BPHYT_RS26885 BPHYT_RS26890 BPHYT_RS26895 BPHYT_RS26900 BPHYT_RS26905
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.4 -0.2 -1.0 -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.5 -1.1 -0.8 -0.0 N.D.
phage 24hr PHYTO6 MOI 1 -1.7 +0.1 +0.3 -0.6 N.D.
phage 36hr PHYTO2 MOI 1 -0.4 +0.1 -0.4 -1.1 N.D.
phage 24hr PHYTO MOI 0.1 -0.9 +0.3 +0.2 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB -1.0 +0.2 -1.1 +0.6 N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.5 +0.2 -1.0 +0.3 N.D.
phage 24hr PHYTO4 MOI 10 -0.2 +0.6 -0.2 -0.9 N.D.
phage 24hr PHYTO7 MOI 1 +0.4 -0.0 +0.5 -1.4 N.D.
phage 36hr PHYTO6 MOI 1 -0.4 +0.1 +0.9 -0.9 N.D.
phage 36hr PHYTO4 MOI 0.1 -0.3 +0.6 +0.4 -1.0 N.D.
phage 24hr PHYTO4 MOI 0.1 -0.1 +0.3 +0.7 -0.8 N.D.
phage 36hr PHYTO MOI 0.1 +0.3 +0.5 +0.5 -1.0 N.D.
phage P. phyto corn MOI 1 +0.3 +0.8 -0.3 -0.7 N.D.
phage P. phyto PHYTO2 MOI 0.1 -0.5 +0.8 +0.4 -0.3 N.D.
phage 36hr PHYTO8 MOI 10 -0.8 +0.6 +1.1 -0.3 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 +0.5 -0.5 +0.8 N.D.
phage 24hr PHYTO2 MOI 1 -0.4 +0.6 +0.7 +0.1 N.D.
phage 36hr PHYTO7 MOI 1 +0.2 +0.5 +0.8 -0.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.7 +0.2 -0.5 N.D.
nophagecontrol 24hr Phyto Lib Only +0.4 +0.7 +0.7 -0.6 N.D.
in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 +1.3 -0.2 +0.4 +0.3 N.D.
carbon source adipate (C) +0.8 +0.8 +0.6 -0.3 N.D.
carbon source D-Glucose (C) +0.5 +0.3 +0.5 +0.6 N.D.
carbon source Protocatechuic Acid (C) +0.6 +0.7 +1.0 -0.4 N.D.
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.1 +0.6 +0.9 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +1.3 -0.1 -0.1 +0.9 N.D.
carbon source Suberic (C) +0.6 +0.6 +1.2 -0.2 N.D.
carbon source Protocatechuic Acid (C) +0.9 +1.0 +0.7 -0.2 N.D.
motility inner cut, LB soft agar motility assay +0.3 +1.0 +0.5 +0.6 N.D.
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BPHYT_RS26890
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