Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26745 and BPHYT_RS26750 are separated by 4 nucleotidesBPHYT_RS26750 and BPHYT_RS26755 are separated by 53 nucleotidesBPHYT_RS26755 and BPHYT_RS26760 are separated by 236 nucleotidesBPHYT_RS26760 and BPHYT_RS26765 are separated by 104 nucleotides BPHYT_RS26745: BPHYT_RS26745 - 2-dehydropantoate 2-reductase, at 1,570,369 to 1,571,352 _RS26745 BPHYT_RS26750: BPHYT_RS26750 - aldolase, at 1,571,357 to 1,572,148 _RS26750 BPHYT_RS26755: BPHYT_RS26755 - aromatic amino acid aminotransferase, at 1,572,202 to 1,573,401 _RS26755 BPHYT_RS26760: BPHYT_RS26760 - LysR family transcriptional regulator, at 1,573,638 to 1,574,579 _RS26760 BPHYT_RS26765: BPHYT_RS26765 - LuxR family transcriptional regulator, at 1,574,684 to 1,575,502 _RS26765
Group Condition BPHYT_RS26745 BPHYT_RS26750 BPHYT_RS26755 BPHYT_RS26760 BPHYT_RS26765
phage P. phyto PHYTO2 MOI 1 N.D. -3.1 -0.7 N.D. -0.3
phage 36hr PHYTO9 MOI 0.1 N.D. -3.2 -0.6 N.D. +0.1
phage 24hr PHYTO6 MOI 10 N.D. -2.9 +0.3 N.D. -0.8
phage 36hr PHYTO2 MOI 1 N.D. -2.1 -0.9 N.D. -0.1
phage 36hr PHYTO10 MOI 10 N.D. -2.8 -0.1 N.D. -0.1
phage 36hr PHYTO3 MOI 1 N.D. -2.2 -0.3 N.D. -0.2
phage 36hr PHYTO10 MOI 1 N.D. -1.0 -0.8 N.D. -0.5
phage 24hr PHYTO6 MOI 1 N.D. -0.9 -0.8 N.D. -0.5
phage 36hr PHYTO4 MOI 1 N.D. -1.5 -0.4 N.D. -0.3
phage 36hr PHYTO MOI 0.1 N.D. -1.2 -0.3 N.D. -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -1.0 -0.3 N.D. -0.7
phage 36hr PHYTO6 MOI 10 N.D. -1.4 -0.2 N.D. -0.3
phage 24hr PHYTO3 MOI 1 N.D. -0.9 -0.2 N.D. -0.7
phage 36hr PHYTO8 MOI 10 N.D. -1.3 -0.5 N.D. -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -1.4 -0.2 N.D. -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.9 -0.3 N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -1.5 +0.1 N.D. -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.8 -0.4 N.D. -0.5
phage 24hr PHYTO1 MOI 1 N.D. -0.7 -0.3 N.D. -0.7
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -1.0 -0.4 N.D. -0.3
phage 36hr PHYTO6 MOI 1 N.D. -1.2 +0.0 N.D. -0.5
carbon source Suberic (C) N.D. -1.1 -0.5 N.D. +0.0
phage 36hr PHYTO3 MOI 1 N.D. -1.3 +0.5 N.D. -0.2
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. +0.5 -1.3 N.D. -0.0
phage 24hr PHYTO3 MOI 10 N.D. +0.9 -0.3 N.D. -1.3
phage 36hr PHYTO6 MOI 0.1 N.D. +0.5 -0.3 N.D. -0.7
phage P. phyto PHYTO2 MOI 0.1 N.D. +1.3 -0.1 N.D. -0.6
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.9 +0.4 N.D. -0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +1.1 +0.5 N.D. -0.1
nitrogen source L-Lysine (N) N.D. +0.7 +0.6 N.D. +0.8
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