Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26685	BPHYT_RS26690	BPHYT_RS26695	BPHYT_RS26700	BPHYT_RS26705
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-3.7	+0.1	-1.8	-0.2	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-3.8	-0.0	+0.1	+0.0	-0.5
carbon source	L-Glutamine (C)	-3.0	-0.6	-0.2	-0.2	-0.1
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	-3.1	+0.0	-0.0	+0.1	-0.9
phage	36hr PHYTO8 MOI 0.1	-1.5	-1.0	-1.2	-0.4	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-4.0	+0.0	+0.1	+0.5	-0.6
carbon source	L-Fucose (C)	-3.4	-0.0	-0.3	+0.4	-0.3
carbon source	D-Galacturonic Acid (C)	-1.5	-0.5	-1.3	-0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.9	-0.9	-0.4	-0.1	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.3	-0.3	-0.9	+0.3	-0.5
phage	P. phyto PHYTO2 MOI 0.1	-2.6	-0.1	-0.2	-0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.9	+0.0	-1.2	+0.1	+0.4
phage	P. phyto PHYTO2 MOI 1	-2.7	-0.7	+0.3	-0.1	+0.6
nitrogen source	L-Asparagine (N)	-1.1	-1.4	-0.5	-0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.2	-0.3	-0.4	+0.4	+0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-2.5	-0.3	+0.5	+0.4	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-2.4	+0.1	+0.2	-0.4	+0.2
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	-0.9	+0.6	-0.7	-0.7	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-2.6	+0.2	-0.4	+0.0	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.3	-0.0	-0.9	+0.4	+0.8
carbon source	Suberic (C)	-2.3	+0.6	-0.3	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-2.1	-0.5	+0.5	+0.6	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-2.6	+0.1	+0.0	-0.1	+1.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.8	-0.9	+0.6	+1.0	+0.8
phage	36hr PHYTO1 MOI 10	-1.5	+0.3	+0.8	+0.4	-0.4
phage	24hr PHYTO3 MOI 1	+1.6	-0.6	-0.9	+0.4	-0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-1.5	-0.3	+0.3	-0.2	+1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+3.0	-0.2	-0.8	-0.5	-0.0
phage	36hr PHYTO6 MOI 10	+1.2	+0.1	+1.5	+0.8	-0.9
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.4	+0.4	+3.1	+1.3	-0.5