Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26680	BPHYT_RS26685	BPHYT_RS26690	BPHYT_RS26695	BPHYT_RS26700
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.5	-3.7	+0.1	-1.8	-0.2
carbon source	L-Glutamine (C)	-0.8	-3.0	-0.6	-0.2	-0.2
phage	P. phyto PHYTO2 MOI 1	-1.6	-2.7	-0.7	+0.3	-0.1
phage	36hr PHYTO8 MOI 0.1	-0.5	-1.5	-1.0	-1.2	-0.4
carbon source	D-Galacturonic Acid (C)	-0.8	-1.5	-0.5	-1.3	-0.4
nitrogen source	L-Glutamine (N)	-1.2	-1.6	-0.7	-0.4	+0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-1.7	-0.0	-0.3	-1.3	-0.3
nitrogen source	L-Asparagine (N)	-0.4	-1.1	-1.4	-0.5	-0.0
supernatant control	Vogels_fungal_media; pH 5.5	-0.9	-1.8	-0.6	-0.2	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.0	-4.0	+0.0	+0.1	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	+0.4	-3.8	-0.0	+0.1	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	-1.9	+0.0	-1.2	+0.1
carbon source	L-Fucose (C)	+0.2	-3.4	-0.0	-0.3	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.8	-1.1	-0.3	-1.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-2.3	-0.0	-0.9	+0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-0.3	-2.5	-0.3	+0.5	+0.4
phage	P. phyto PHYTO2 MOI 0.1	+0.7	-2.6	-0.1	-0.2	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	-2.1	-0.5	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.8	-1.8	-0.9	+0.6	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.6	-2.2	-0.3	-0.4	+0.4
carbon source	Suberic (C)	+0.3	-2.3	+0.6	-0.3	-0.2
phage	24hr PHYTO3 MOI 10	-2.1	+1.4	-0.1	-0.8	-0.2
phage	36hr PHYTO6 MOI 1	-2.0	+0.7	-0.6	+0.6	+0.6
phage	24hr PHYTO10 MOI 10	-2.0	+1.6	-0.3	+0.1	-0.1
phage	P. phyto corn MOI 1	-2.0	+0.5	+0.2	+0.6	+0.3
phage	24hr PHYTO3 MOI 1	+0.2	+1.6	-0.6	-0.9	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+3.0	-0.2	-0.8	-0.5
phage	36hr PHYTO2 MOI 1	+0.7	+1.2	-0.9	+0.4	+0.2
phage	36hr PHYTO6 MOI 10	-0.2	+1.2	+0.1	+1.5	+0.8
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	+0.8	+0.4	+0.4	+3.1	+1.3