Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26500 and BPHYT_RS26505 overlap by 4 nucleotidesBPHYT_RS26505 and BPHYT_RS26510 are separated by 160 nucleotidesBPHYT_RS26510 and BPHYT_RS26515 are separated by 24 nucleotidesBPHYT_RS26515 and BPHYT_RS26520 overlap by 2 nucleotides BPHYT_RS26500: BPHYT_RS26500 - ATPase, at 1,515,722 to 1,516,171 _RS26500 BPHYT_RS26505: BPHYT_RS26505 - ArsR family transcriptional regulator, at 1,516,168 to 1,516,503 _RS26505 BPHYT_RS26510: BPHYT_RS26510 - transcriptional regulator, at 1,516,664 to 1,517,569 _RS26510 BPHYT_RS26515: BPHYT_RS26515 - HAD family hydrolase, at 1,517,594 to 1,518,208 _RS26515 BPHYT_RS26520: BPHYT_RS26520 - hypothetical protein, at 1,518,207 to 1,518,386 _RS26520
Group Condition BPHYT_RS26500 BPHYT_RS26505 BPHYT_RS26510 BPHYT_RS26515 BPHYT_RS26520
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -3.7 -0.6 N.D.
phage P. phyto PHYTO2 MOI 1 N.D. N.D. -3.3 -0.2 N.D.
phage 36hr PHYTO11 MOI 0.1 N.D. N.D. -2.9 -0.0 N.D.
nophagecontrol 36hr Phyto Lib only N.D. N.D. -2.7 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -2.4 -0.3 N.D.
nophagecontrol 24hr Phyto Lib Only N.D. N.D. -2.8 +0.4 N.D.
phage 36hr PHYTO11 MOI 1 N.D. N.D. -2.9 +0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. -1.8 -0.4 N.D.
carbon source succinate (C) N.D. N.D. -1.9 -0.2 N.D.
phage 36hr PHYTO2 MOI 1 N.D. N.D. -2.5 +0.5 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -1.0 -1.0 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -1.7 -0.1 N.D.
phage 24hr PHYTO11 MOI 0.1 N.D. N.D. -1.9 +0.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.6 -0.2 N.D.
vitamin No vitamins t2 N.D. N.D. -1.7 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. N.D. -1.6 +0.4 N.D.
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 N.D. N.D. -2.3 +1.9 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. N.D. +1.6 -1.7 N.D.
phage 36hr PHYTO3 MOI 1 N.D. N.D. -1.0 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.8 +1.2 N.D.
phage 36hr PHYTO3 MOI 0.1 N.D. N.D. +1.5 -0.5 N.D.
phage 36hr PHYTO7 MOI 1 N.D. N.D. +1.6 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +2.6 -0.9 N.D.
phage 24hr PHYTO6 MOI 10 N.D. N.D. +1.4 +0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.9 +1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.0 +1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +2.2 -0.1 N.D.
phage 24hr PHYTO3 MOI 10 N.D. N.D. +1.5 +0.6 N.D.
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days N.D. N.D. +2.0 +0.2 N.D.
phage 24hr PHYTO4 MOI 10 N.D. N.D. +1.7 +0.6 N.D.
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