Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26270	BPHYT_RS26275	BPHYT_RS26280	BPHYT_RS26285	BPHYT_RS26290
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.5	+0.0	-0.9	-1.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.8	-0.7	-1.0
phage	36hr PHYTO7 MOI 0.1	N.D.	+0.1	-0.9	-0.7	-1.0
phage	24hr PHYTO9 MOI 10	N.D.	-0.1	-2.4	+0.7	-0.6
no phage control	No phage control	N.D.	+0.1	-2.1	-0.4	+0.0
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	N.D.	-0.3	-0.7	-0.7	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+0.0	-0.6	-1.6	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	N.D.	+0.0	-0.2	-2.1	+0.1
carbon source	2-Deoxy-D-ribonic lithium salt (C)	N.D.	-0.9	+0.4	-0.2	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	-0.0	-1.1	-1.1
phage	24hr PHYTO MOI 0.1	N.D.	+0.2	-1.8	+0.5	-0.7
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-0.9	-1.1	+0.4	+0.1
replicable vector efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pBBR1-MCS5; outgrowth in LB_gent50	N.D.	+0.2	-0.5	-1.9	+0.6
phage	36hr PHYTO7 MOI 1	N.D.	-0.1	-1.2	+0.6	-0.6
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	N.D.	+0.3	-0.5	-1.0	+0.4
phage	24hr PHYTO6 MOI 0.1	N.D.	+0.3	-1.1	+0.7	-0.6
phage	36hr PHYTO6 MOI 10	N.D.	-0.4	-0.7	+0.8	-0.4
phage	24hr PHYTO3 MOI 10	N.D.	+0.9	-0.7	+0.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	+0.5	-0.2	-1.1
phage	24hr PHYTO11 MOI 0.1	N.D.	-0.3	+0.8	+0.4	-1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	-0.8	+1.6	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	-0.6	-0.0	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.1	+0.0	-0.6	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.2	-0.1	-0.6	+1.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.3	-0.4	-0.1	+1.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	+0.1	+1.5	-0.6
phage	36hr PHYTO3 MOI 0.1	N.D.	+0.1	-0.4	+1.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.2	+0.2	+1.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.2	+1.5	-0.0	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	-0.2	+0.6	+2.0