Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26240	BPHYT_RS26245	BPHYT_RS26250	BPHYT_RS26255	BPHYT_RS26260
phage	36hr PHYTO4 MOI 1	-0.8	N.D.	-0.0	+0.1	-1.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	N.D.	+0.0	-0.4	-0.9
phage	24hr PHYTO10 MOI 1	+0.1	N.D.	-0.8	-0.2	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	-0.9	N.D.	-0.2	-0.3	-0.4
phage	24hr PHYTO3 MOI 10	-0.7	N.D.	-0.7	+0.6	-0.8
nophagecontrol	36hr Phyto Lib Only	+0.1	N.D.	+0.1	-0.5	-1.3
phage	36hr PHYTO3 MOI 1	-0.9	N.D.	+0.1	-0.2	-0.5
carbon source	2-Deoxy-D-ribonic lithium salt (C)	-1.0	N.D.	+0.3	-0.4	-0.4
phage	36hr PHYTO2 MOI 1	-0.2	N.D.	-0.8	+0.2	-0.6
phage	P. phyto corn MOI 1	+0.4	N.D.	-0.5	-0.4	-0.9
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.1	N.D.	+0.3	-0.1	-0.5
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	N.D.	-0.1	+0.7	-0.7
phage	24hr PHYTO11 MOI 0.1	-0.3	N.D.	+0.4	-0.0	-1.1
vitamin	With vitamins t1	-1.4	N.D.	+0.3	-0.1	+0.2
phage	P. phyto PHYTO2 MOI 1	+0.7	N.D.	-0.1	-0.1	-1.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.5	N.D.	-0.9	-0.4	-0.1
phage	24hr PHYTO MOI 0.1	-0.6	N.D.	+0.4	+0.3	-0.5
phage	36hr PHYTO3 MOI 1	+0.1	N.D.	+0.2	+0.6	-1.1
phage	36hr PHYTO8 MOI 10	+0.6	N.D.	+0.1	-0.2	-0.7
phage	36hr PHYTO2 MOI 1	+0.3	N.D.	-0.0	+0.5	-0.9
carbon source	Tween 20 (C)	-0.6	N.D.	+0.3	+0.7	-0.2
nophagecontrol	36hr Phyto Lib only	-0.9	N.D.	+0.1	+0.4	+0.7
phage	24hr PHYTO3 MOI 10	+1.0	N.D.	+0.2	+0.3	-1.1
lb_dap plate control and outgrow on gent	LB_DAP agar plate, outgrowth in LB_gent	+0.4	N.D.	+0.5	+0.5	-0.4
phage	36hr PHYTO1 MOI 1	+0.7	N.D.	+0.7	+0.4	-0.6
tn7 efficiency	Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50	+0.7	N.D.	-0.3	+0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	+0.7	+0.1	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.7	N.D.	+0.7	-0.0	+0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.6	N.D.	+0.6	-0.2	+0.8
temperature	LB 37C	+0.1	N.D.	+0.2	-0.1	+1.8