Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26210	BPHYT_RS26215	BPHYT_RS26220	BPHYT_RS26225	BPHYT_RS26230
phage	24hr PHYTO9 MOI 10	N.D.	-1.3	-0.1	-1.0	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	-0.5	-0.2	-1.0	-0.6
phage	24hr PHYTO7 MOI 10	N.D.	-0.8	-0.1	-0.3	-0.9
phage	24hr PHYTO6 MOI 10	N.D.	-0.5	-0.1	-0.8	-0.5
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-0.8	-0.5	-0.7	+0.1
phage	24hr PHYTO1 MOI 10	N.D.	-0.9	+0.1	-0.9	-0.2
nitrogen source	L-Lysine (N)	N.D.	-0.6	-0.3	-0.5	-0.3
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	N.D.	-0.3	-0.3	-0.1	-0.9
phage	24hr PHYTO7 MOI 1	N.D.	-0.1	+0.3	-0.8	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	+0.3	-1.1	-0.1
phage	36hr PHYTO4 MOI 1	N.D.	-0.0	+0.3	-1.2	-0.3
phage	24hr PHYTO1 MOI 1	N.D.	-1.0	-0.1	+0.3	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.0	+0.4	-1.4	-0.1
nitrogen source	Uridine (N)	N.D.	-0.5	+0.2	-0.9	+0.2
phage	PHYTO3 MOI 0.1	N.D.	-1.4	+0.3	+0.3	-0.1
phage	36hr PHYTO2 MOI 1	N.D.	-0.8	+0.4	-0.7	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	+0.2	+0.0	-1.2	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.9	-0.2	+0.7	+0.2
phage	36hr PHYTO6 MOI 10	N.D.	+0.3	+0.2	-1.0	+0.3
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.8	-0.0	-0.9	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.4	-0.1	-0.4	+1.1
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.8	+0.3	-1.2	+0.3
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	N.D.	-0.8	+0.2	+0.7	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.8	-0.2	+1.2	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.3	-0.5	+1.1	-0.4
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	N.D.	-0.7	+0.1	+0.7	+0.5
phage	36hr PHYTO10 MOI 10	N.D.	-0.6	+0.3	+0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.0	+0.4	-0.2	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.0	+0.2	+1.7	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+0.0	+2.3	+0.4