Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS26200	BPHYT_RS26205	BPHYT_RS26210	BPHYT_RS26215	BPHYT_RS26220
phage	36hr PHYTO2 MOI 1	-1.5	-0.5	N.D.	-0.8	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-0.1	N.D.	-0.9	-0.0
phage	24hr PHYTO9 MOI 10	-0.5	+0.4	N.D.	-1.3	-0.1
phage	24hr PHYTO11 MOI 1	-1.2	+0.0	N.D.	-0.3	+0.1
phage	24hr PHYTO1 MOI 1	-0.4	+0.3	N.D.	-1.0	-0.1
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	-1.5	+0.1	N.D.	+0.1	+0.1
phage	PHYTO3 MOI 0.1	-0.3	+0.1	N.D.	-1.4	+0.3
phage	24hr PHYTO2 MOI 1	-1.0	+0.4	N.D.	-0.6	+0.1
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.6	+0.3	N.D.	-0.8	+0.1
carbon source	Phenylacetic 5 mM (C)	-1.0	-0.2	N.D.	+0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+0.7	N.D.	-0.8	-0.1
phage	36hr PHYTO3 MOI 1	-0.6	+0.2	N.D.	-0.6	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB	-0.9	+0.6	N.D.	+0.2	-0.4
phage	24hr PHYTO4 MOI 10	-1.1	+0.3	N.D.	+0.0	+0.3
phage	24hr PHYTO3 MOI 1	-0.2	+0.6	N.D.	-0.8	+0.2
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	-0.4	+0.3	N.D.	+0.6	-0.4
phage	P. phyto corn MOI 1	-1.0	+0.4	N.D.	+0.7	+0.0
in planta	Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days	+0.8	+0.2	N.D.	-0.3	-0.3
in planta	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10	-0.9	+0.7	N.D.	+1.0	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8	+0.2	N.D.	-0.4	-0.3
stress	Nickel (II) chloride 0.5 mM	+0.2	+0.6	N.D.	-0.6	+0.2
carbon source	Malonic (C)	-0.4	-0.2	N.D.	+0.9	+0.2
carbon source	Protocatechuic Acid (C)	+1.0	+0.1	N.D.	-0.8	+0.4
phage	36hr PHYTO10 MOI 10	+0.7	+0.2	N.D.	-0.6	+0.3
phage	24hr PHYTO MOI 0.1	+0.8	+0.1	N.D.	-0.6	+0.5
carbon source	Tween 20 (C)	+0.7	+0.4	N.D.	-0.2	+0.4
carbon source	adipate (C)	+1.1	+0.3	N.D.	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.8	+0.4	N.D.	-0.2	+0.5
in planta	Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	+0.8	-0.3	N.D.	+0.8	+0.3
carbon source	Suberic (C)	+1.3	+0.4	N.D.	-0.1	+0.1