Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26160 and BPHYT_RS26165 are separated by 56 nucleotidesBPHYT_RS26165 and BPHYT_RS26170 are separated by 206 nucleotidesBPHYT_RS26170 and BPHYT_RS26175 are separated by 80 nucleotidesBPHYT_RS26175 and BPHYT_RS26180 are separated by 20 nucleotides BPHYT_RS26160: BPHYT_RS26160 - membrane protein, at 1,443,950 to 1,444,756 _RS26160 BPHYT_RS26165: BPHYT_RS26165 - hypothetical protein, at 1,444,813 to 1,445,517 _RS26165 BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296 _RS26170 BPHYT_RS26175: BPHYT_RS26175 - XRE family transcriptional regulator, at 1,446,377 to 1,446,949 _RS26175 BPHYT_RS26180: BPHYT_RS26180 - acetyltransferase, at 1,446,970 to 1,447,506 _RS26180
Group Condition BPHYT_RS26160 BPHYT_RS26165 BPHYT_RS26170 BPHYT_RS26175 BPHYT_RS26180
phage 24hr PHYTO2 MOI 1 -2.3 N.D. -0.5 N.D. N.D.
tn7 efficiency Conjugation on LB_DAP agar plate with WM3064 carrying pRH19; outgrowth in LB_gent50 -1.8 N.D. +0.1 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.5 N.D. -0.2 N.D. N.D.
phage 24hr PHYTO11 MOI 0.1 -1.5 N.D. +0.1 N.D. N.D.
carbon source Suberic (C) -1.3 N.D. -0.2 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.7 N.D. +0.3 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.4 N.D. +0.0 N.D. N.D.
phage 36hr PHYTO10 MOI 1 -0.7 N.D. -0.6 N.D. N.D.
phage 24hr PHYTO4 MOI 0.1 -0.5 N.D. -0.8 N.D. N.D.
phage 24hr PHYTO MOI 0.1 -0.7 N.D. -0.5 N.D. N.D.
phage P. phyto corn MOI 0.1 -1.0 N.D. -0.2 N.D. N.D.
phage 24hr PHYTO10 MOI 10 -0.5 N.D. -0.6 N.D. N.D.
phage 24hr PHYTO11 MOI 1 -0.4 N.D. -0.6 N.D. N.D.
carbon source D-Glucose (C) -0.9 N.D. -0.2 N.D. N.D.
phage 24hr PHYTO6 MOI 0.1 -1.0 N.D. +0.1 N.D. N.D.
phage 24hr PHYTO6 MOI 10 -1.3 N.D. +0.4 N.D. N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.1 N.D. +0.4 N.D. N.D.
phage 36hr PHYTO4 MOI 0.1 -0.7 N.D. +0.3 N.D. N.D.
nitrogen source L-Isoleucine (N) -0.9 N.D. +0.5 N.D. N.D.
nitrogen source L-Glutamine (N) -0.7 N.D. +0.4 N.D. N.D.
phage 24hr PHYTO9 MOI 10 +0.8 N.D. -0.7 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 N.D. -0.6 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 N.D. +0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.9 N.D. -0.3 N.D. N.D.
phage 36hr PHYTO8 MOI 0.1 +1.1 N.D. -0.3 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.9 N.D. +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.1 N.D. +0.1 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.2 N.D. +0.1 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X +0.8 N.D. +0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 N.D. +0.4 N.D. N.D.
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