Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26025 and BPHYT_RS26030 overlap by 10 nucleotidesBPHYT_RS26030 and BPHYT_RS26035 overlap by 4 nucleotidesBPHYT_RS26035 and BPHYT_RS26040 are separated by 2 nucleotidesBPHYT_RS26040 and BPHYT_RS26045 are separated by 61 nucleotides BPHYT_RS26025: BPHYT_RS26025 - hypothetical protein, at 1,414,729 to 1,415,124 _RS26025 BPHYT_RS26030: BPHYT_RS26030 - cysteine hydrolase, at 1,415,115 to 1,415,810 _RS26030 BPHYT_RS26035: BPHYT_RS26035 - ABC transporter ATP-binding protein, at 1,415,807 to 1,417,417 _RS26035 BPHYT_RS26040: BPHYT_RS26040 - cysteine hydrolase, at 1,417,420 to 1,418,112 _RS26040 BPHYT_RS26045: BPHYT_RS26045 - ABC transporter permease, at 1,418,174 to 1,419,091 _RS26045
Group Condition BPHYT_RS26025 BPHYT_RS26030 BPHYT_RS26035 BPHYT_RS26040 BPHYT_RS26045
phage P. phyto PHYTO2 MOI 1 -3.3 -0.1 -2.6 +0.0 +0.2
phage 24hr PHYTO9 MOI 10 -2.9 -1.8 -0.7 +0.1 +0.7
carbon source Azelaic (C) -3.3 -0.3 -0.3 -0.1 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -4.3 +0.5 +0.4 -0.3 +0.2
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -3.5 +0.4 +0.3 -0.6 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 -0.5 +0.4 +0.3 -2.0
phage 36hr PHYTO7 MOI 0.1 -2.1 -0.2 -1.2 +0.5 +0.4
phage 24hr PHYTO3 MOI 10 -2.3 +0.3 -1.2 +0.9 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.5 -1.0 -0.4 +0.4 +0.4
phage 24hr PHYTO11 MOI 1 -2.8 -0.2 +0.2 +0.8 +0.2
phage PHYTO3 MOI 0.1 -2.2 -0.7 +0.2 +0.6 +0.5
carbon source Protocatechuic Acid (C) -2.4 -0.5 +0.7 +0.8 -0.3
phage 36hr PHYTO8 MOI 10 -1.9 -0.3 +0.6 +0.8 -0.5
phage 24hr PHYTO3 MOI 0.1 -2.0 +0.9 -0.8 +0.7 -0.1
nophagecontrol 36hr Phyto Lib Only -1.9 +0.7 -0.7 +0.5 +0.1
phage 24hr PHYTO2 MOI 0.1 -2.0 +0.5 -0.2 +0.7 +0.3
nophagecontrol 36hr Phyto Lib only -1.9 +0.7 -0.6 +1.1 +0.2
phage 36hr PHYTO2 MOI 1 +0.9 -1.6 -1.0 +1.1 +0.4
phage 24hr PHYTO4 MOI 10 +0.1 +0.8 -1.7 +0.8 +0.4
phage 36hr PHYTO6 MOI 10 +0.9 +0.7 -1.5 +0.6 +0.1
phage 24hr PHYTO6 MOI 1 +1.8 -0.1 -0.8 +0.4 +0.8
phage 36hr PHYTO MOI 0.1 +1.8 +0.8 -0.7 +0.7 -0.0
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +2.1 +0.3 +0.6 -0.8 +0.2
phage 24hr PHYTO1 MOI 1 +1.7 +1.0 -0.8 +1.1 -0.0
phage 36hr PHYTO10 MOI 10 +1.3 +1.0 -0.9 +1.2 +0.7
phage 24hr PHYTO4 MOI 0.1 +2.1 +0.7 -0.4 +0.8 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +2.5 -0.9 +0.2 +0.5 +1.1
phage 36hr PHYTO6 MOI 0.1 +1.0 +1.4 -0.2 +0.8 +0.5
phage 36hr PHYTO11 MOI 1 +2.0 +1.1 +0.1 +0.9 -0.2
phage 24hr PHYTO6 MOI 10 +1.8 +0.8 +0.6 +0.5 +0.4
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BPHYT_RS26025
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