Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS26005 and BPHYT_RS26010 are separated by 505 nucleotidesBPHYT_RS26010 and BPHYT_RS26015 are separated by 157 nucleotidesBPHYT_RS26015 and BPHYT_RS26020 are separated by 35 nucleotidesBPHYT_RS26020 and BPHYT_RS26025 are separated by 35 nucleotides BPHYT_RS26005: BPHYT_RS26005 - MarR family transcriptional regulator, at 1,410,814 to 1,411,182 _RS26005 BPHYT_RS26010: BPHYT_RS26010 - ABC transporter substrate-binding protein, at 1,411,688 to 1,412,698 _RS26010 BPHYT_RS26015: BPHYT_RS26015 - rod shape-determining protein MreB, at 1,412,856 to 1,413,899 _RS26015 BPHYT_RS26020: BPHYT_RS26020 - GntR family transcriptional regulator, at 1,413,935 to 1,414,693 _RS26020 BPHYT_RS26025: BPHYT_RS26025 - hypothetical protein, at 1,414,729 to 1,415,124 _RS26025
Group Condition BPHYT_RS26005 BPHYT_RS26010 BPHYT_RS26015 BPHYT_RS26020 BPHYT_RS26025
carbon source Suberic (C) -0.4 -0.7 -1.8 N.D. -2.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -0.1 -0.9 +0.6 N.D. -4.3
phage 24hr PHYTO9 MOI 10 -1.0 -0.2 +0.1 N.D. -2.9
carbon source Azelaic (C) +0.2 -0.3 -0.5 N.D. -3.3
phage PHYTO3 MOI 0.1 -0.2 -0.8 -0.8 N.D. -2.2
phage 24hr PHYTO3 MOI 10 +0.9 -0.5 -1.8 N.D. -2.3
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 +0.6 +0.6 N.D. -3.5
phage P. phyto PHYTO2 MOI 1 +0.7 +0.1 -0.6 N.D. -3.3
phage 36hr PHYTO7 MOI 0.1 +0.7 -1.5 +0.3 N.D. -2.1
phage 24hr PHYTO11 MOI 1 -0.7 +0.1 +1.0 N.D. -2.8
phage 36hr PHYTO9 MOI 0.1 -1.1 +0.0 +0.9 N.D. -2.1
nophagecontrol 36hr Phyto Lib Only +0.5 -0.7 +0.1 N.D. -1.9
phage 24hr PHYTO2 MOI 0.1 +0.8 -0.2 -0.6 N.D. -2.0
phage P. phyto PHYTO2 MOI 0.1 +0.3 -0.6 -1.9 N.D. +0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 -0.9 +1.6 N.D. -1.1
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 +0.5 +0.4 N.D. -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +0.2 +0.0 N.D. -2.0
phage 24hr PHYTO6 MOI 1 +0.1 -1.0 -1.2 N.D. +1.8
carbon source D-Glucose 20 mM (C) +0.3 +0.7 +0.8 N.D. -1.9
phage 36hr PHYTO8 MOI 10 +0.9 +0.1 +0.9 N.D. -1.9
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.6 +1.5 -0.8 N.D. +0.6
phage 36hr PHYTO6 MOI 0.1 +0.8 -1.1 -0.0 N.D. +1.0
in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -1.0 +0.9 +0.5 N.D. +0.7
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days +0.4 -0.3 -0.4 N.D. +2.1
in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 +0.7 +2.3 -0.8 N.D. -0.1
phage 36hr PHYTO11 MOI 1 +0.5 -0.7 +0.5 N.D. +2.0
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.2 -1.0 +2.6 N.D. -0.5
phage 36hr PHYTO10 MOI 10 +0.5 +0.7 +0.8 N.D. +1.3
phage 36hr PHYTO6 MOI 1 +0.5 +0.2 +0.6 N.D. +2.0
phage 36hr PHYTO7 MOI 1 +1.1 +0.3 +0.7 N.D. +1.7
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