Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25870 and BPHYT_RS25875 are separated by 12 nucleotidesBPHYT_RS25875 and BPHYT_RS25880 are separated by 1 nucleotidesBPHYT_RS25880 and BPHYT_RS25885 are separated by 32 nucleotidesBPHYT_RS25885 and BPHYT_RS25890 overlap by 1 nucleotides BPHYT_RS25870: BPHYT_RS25870 - type III secretion system ATPase, at 1,383,596 to 1,384,924 _RS25870 BPHYT_RS25875: BPHYT_RS25875 - type III secretion protein, at 1,384,937 to 1,387,012 _RS25875 BPHYT_RS25880: BPHYT_RS25880 - type III secretion protein, at 1,387,014 to 1,387,754 _RS25880 BPHYT_RS25885: BPHYT_RS25885 - type III secretion protein, at 1,387,787 to 1,388,476 _RS25885 BPHYT_RS25890: BPHYT_RS25890 - type III secretion protein, at 1,388,476 to 1,388,751 _RS25890
Group Condition BPHYT_RS25870 BPHYT_RS25875 BPHYT_RS25880 BPHYT_RS25885 BPHYT_RS25890
phage P. phyto PHYTO2 MOI 1 -3.3 -2.6 N.D. +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.9 -3.6 N.D. -0.0 N.D.
phage 24hr PHYTO MOI 0.1 -1.1 -0.8 N.D. -3.5 N.D.
nophagecontrol 36hr Phyto Lib only -2.6 -1.6 N.D. -1.1 N.D.
phage 24hr PHYTO2 MOI 0.1 -2.6 -1.7 N.D. -0.7 N.D.
phage 36hr PHYTO6 MOI 1 -2.6 -1.6 N.D. -0.6 N.D.
phage 24hr PHYTO MOI 0.1 -2.6 -1.7 N.D. -0.5 N.D.
nophagecontrol 24hr Phyto Lib Only -2.7 -0.8 N.D. -1.0 N.D.
phage 36hr PHYTO10 MOI 10 -2.4 -1.4 N.D. -0.4 N.D.
phage 24hr PHYTO6 MOI 0.1 -2.7 -0.8 N.D. -0.6 N.D.
phage 24hr PHYTO6 MOI 1 -2.6 -1.7 N.D. +0.2 N.D.
phage 36hr PHYTO4 MOI 1 -2.5 -1.5 N.D. +0.0 N.D.
phage 24hr PHYTO2 MOI 1 -2.8 -0.8 N.D. -0.4 N.D.
carbon source D-Glucose (C) -0.2 -3.2 N.D. -0.4 N.D.
phage 24hr PHYTO3 MOI 10 -0.6 -2.0 N.D. -1.0 N.D.
phage 36hr PHYTO3 MOI 1 -2.8 -0.4 N.D. -0.3 N.D.
phage 36hr PHYTO11 MOI 1 -2.8 -0.9 N.D. +0.4 N.D.
supernatant control Vogels_fungal_media 0.1X -2.8 -0.5 N.D. +0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.1 +0.4 N.D. -0.4 N.D.
phage P. phyto PHYTO2 MOI 0.1 +0.1 -2.3 N.D. -0.9 N.D.
phage 36hr PHYTO MOI 0.1 -2.8 +0.5 N.D. -0.5 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -3.7 +0.6 N.D. +0.5 N.D.
phage 24hr PHYTO10 MOI 10 -2.6 +0.6 N.D. -0.2 N.D.
phage 36hr PHYTO2 MOI 0.1 -2.7 +0.8 N.D. -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.6 -2.9 N.D. +0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.1 +1.4 N.D. -1.8 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -2.0 +0.8 N.D. +0.9 N.D.
phage 24hr PHYTO8 MOI 1 +1.5 -1.7 N.D. +0.6 N.D.
phage 24hr PHYTO3 MOI 0.1 -1.1 +1.5 N.D. +1.0 N.D.
phage 24hr PHYTO7 MOI 1 +1.9 +1.6 N.D. +1.4 N.D.
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