Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25835 and BPHYT_RS25840 are separated by 270 nucleotidesBPHYT_RS25840 and BPHYT_RS25845 are separated by 18 nucleotidesBPHYT_RS25845 and BPHYT_RS25850 are separated by 27 nucleotidesBPHYT_RS25850 and BPHYT_RS25855 are separated by 132 nucleotides BPHYT_RS25835: BPHYT_RS25835 - hypothetical protein, at 1,371,106 to 1,371,393 _RS25835 BPHYT_RS25840: BPHYT_RS25840 - acriflavin resistance protein, at 1,371,664 to 1,374,918 _RS25840 BPHYT_RS25845: BPHYT_RS25845 - RND transporter MFP subunit, at 1,374,937 to 1,376,304 _RS25845 BPHYT_RS25850: BPHYT_RS25850 - RND transporter, at 1,376,332 to 1,377,819 _RS25850 BPHYT_RS25855: BPHYT_RS25855 - hypothetical protein, at 1,377,952 to 1,381,713 _RS25855
Group Condition BPHYT_RS25835 BPHYT_RS25840 BPHYT_RS25845 BPHYT_RS25850 BPHYT_RS25855
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.4 -4.8 N.D. +0.2
phage P. phyto PHYTO2 MOI 1 N.D. +0.2 -4.2 N.D. +0.3
phage 24hr PHYTO MOI 0.1 N.D. +0.0 -3.2 N.D. -0.2
phage 36hr PHYTO11 MOI 0.1 N.D. -0.2 -3.4 N.D. +0.2
phage 36hr PHYTO4 MOI 0.1 N.D. +0.0 -3.2 N.D. +0.1
phage P. phyto PHYTO2 MOI 1 N.D. -0.4 -2.2 N.D. -0.2
phage 36hr PHYTO10 MOI 10 N.D. -0.2 -3.0 N.D. +0.4
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days N.D. -0.5 -2.2 N.D. -0.0
carbon source Malonic (C) N.D. -0.1 -1.9 N.D. +0.1
temperature LB 37C N.D. -0.2 -1.6 N.D. +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 -1.5 N.D. +0.1
phage 36hr PHYTO1 MOI 10 N.D. -0.0 -1.8 N.D. +0.3
phage 36hr PHYTO7 MOI 1 N.D. -0.1 -1.5 N.D. +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.3 -1.4 N.D. +0.1
phage PHYTO3 MOI 0.1 N.D. +0.0 -1.5 N.D. +0.5
phage 36hr PHYTO11 MOI 0.1 N.D. +0.5 -1.7 N.D. +0.3
phage 24hr PHYTO3 MOI 10 N.D. -0.2 -1.2 N.D. +0.6
phage 24hr PHYTO4 MOI 10 N.D. +0.2 -1.2 N.D. +0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.3 -1.2 N.D. +0.4
carbon source Tween 20 (C) N.D. +0.5 -1.1 N.D. +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.2 +1.1 N.D. -0.8
nitrogen source L-Phenylalanine (N) N.D. +0.0 +1.3 N.D. -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.2 +1.5 N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.4 +1.2 N.D. +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days N.D. -0.3 +1.0 N.D. +0.5
nitrogen source D-Alanine (N) N.D. -0.3 +1.5 N.D. +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X; growth supplemented with 0.4X LB N.D. +0.6 +0.7 N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.1 +1.2 N.D. +0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.4 +1.0 N.D. +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.0 +2.2 N.D. +0.1
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BPHYT_RS25835
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BPHYT_RS25840
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BPHYT_RS25855
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