Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25720 and BPHYT_RS25725 are separated by 98 nucleotidesBPHYT_RS25725 and BPHYT_RS25730 overlap by 8 nucleotidesBPHYT_RS25730 and BPHYT_RS25735 overlap by 4 nucleotidesBPHYT_RS25735 and BPHYT_RS25740 are separated by 533 nucleotides BPHYT_RS25720: BPHYT_RS25720 - hypothetical protein, at 1,343,617 to 1,344,117 _RS25720 BPHYT_RS25725: BPHYT_RS25725 - hypothetical protein, at 1,344,216 to 1,344,713 _RS25725 BPHYT_RS25730: BPHYT_RS25730 - hypothetical protein, at 1,344,706 to 1,347,030 _RS25730 BPHYT_RS25735: BPHYT_RS25735 - integrase, at 1,347,027 to 1,348,070 _RS25735 BPHYT_RS25740: BPHYT_RS25740 - hypothetical protein, at 1,348,604 to 1,349,182 _RS25740
Group Condition BPHYT_RS25720 BPHYT_RS25725 BPHYT_RS25730 BPHYT_RS25735 BPHYT_RS25740
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 N.D. -0.4 -0.9 N.D.
nitrogen source L-Glutamic (N) -0.3 N.D. -0.6 -0.3 N.D.
phage P. phyto PHYTO2 MOI 1 -0.0 N.D. -0.2 -0.9 N.D.
nitrogen source L-Isoleucine (N) -0.8 N.D. -0.0 -0.3 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB -0.4 N.D. -0.0 -0.7 N.D.
phage P. phyto PHYTO2 MOI 1 -0.9 N.D. +0.2 -0.1 N.D.
phage 36hr PHYTO8 MOI 10 -0.3 N.D. +0.4 -0.9 N.D.
phage 24hr PHYTO8 MOI 1 +0.5 N.D. -0.2 -1.0 N.D.
phage P. phyto PHYTO2 MOI 0.1 -0.4 N.D. +0.3 -0.6 N.D.
carbon source D-Galacturonic Acid (C) +0.3 N.D. -0.5 -0.3 N.D.
phage 36hr PHYTO6 MOI 0.1 -0.5 N.D. +0.4 -0.4 N.D.
phage 36hr PHYTO3 MOI 1 -0.2 N.D. +0.3 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. -0.2 -0.8 N.D.
phage 24hr PHYTO6 MOI 1 -0.3 N.D. +0.6 -0.3 N.D.
phage 36hr PHYTO8 MOI 10 -0.1 N.D. +0.8 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.7 N.D. -0.0 +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 N.D. +0.1 +0.7 N.D.
phage 36hr PHYTO11 MOI 0.1 +0.6 N.D. +0.3 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 N.D. +0.3 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 N.D. -0.2 +0.1 N.D.
phage 36hr PHYTO4 MOI 0.1 +0.8 N.D. +0.4 -0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. +0.3 -0.3 N.D.
phage 36hr PHYTO7 MOI 1 +0.9 N.D. +0.4 -0.3 N.D.
motility outer cut, LB soft agar motility assay -0.1 N.D. +0.3 +0.8 N.D.
phage 24hr PHYTO6 MOI 10 +0.6 N.D. +0.3 +0.2 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +1.3 N.D. -0.0 -0.2 N.D.
phage 24hr PHYTO2 MOI 0.1 +0.6 N.D. +0.3 +0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 N.D. +0.5 -0.5 N.D.
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days +1.0 N.D. +0.1 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 N.D. +0.3 +0.8 N.D.
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BPHYT_RS25720
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BPHYT_RS25725
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BPHYT_RS25735
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BPHYT_RS25740
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