Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25685 and BPHYT_RS25690 are separated by 14 nucleotidesBPHYT_RS25690 and BPHYT_RS25695 are separated by 56 nucleotidesBPHYT_RS25695 and BPHYT_RS25700 are separated by 127 nucleotidesBPHYT_RS25700 and BPHYT_RS25705 are separated by 20 nucleotides BPHYT_RS25685: BPHYT_RS25685 - damage-inducible protein DinB, at 1,336,038 to 1,336,556 _RS25685 BPHYT_RS25690: BPHYT_RS25690 - GntR family transcriptional regulator, at 1,336,571 to 1,337,380 _RS25690 BPHYT_RS25695: BPHYT_RS25695 - enoyl-CoA hydratase, at 1,337,437 to 1,338,168 _RS25695 BPHYT_RS25700: BPHYT_RS25700 - MFS transporter, at 1,338,296 to 1,339,696 _RS25700 BPHYT_RS25705: BPHYT_RS25705 - aldehyde dehydrogenase, at 1,339,717 to 1,341,228 _RS25705
Group Condition BPHYT_RS25685 BPHYT_RS25690 BPHYT_RS25695 BPHYT_RS25700 BPHYT_RS25705
phage 24hr PHYTO3 MOI 1 -1.6 N.D. N.D. -0.1 -1.7
phage 24hr PHYTO1 MOI 10 -0.5 N.D. N.D. -0.5 -2.5
phage 24hr PHYTO2 MOI 0.1 -0.6 N.D. N.D. -0.8 -1.8
phage 24hr PHYTO9 MOI 0.1 -0.4 N.D. N.D. -0.6 -2.2
phage 24hr PHYTO10 MOI 10 -0.5 N.D. N.D. -0.4 -2.0
supernatant control Vogels_fungal_media; pH 5.5 -0.9 N.D. N.D. -0.1 -1.8
phage 36hr PHYTO10 MOI 10 -0.3 N.D. N.D. -0.4 -2.0
phage 24hr PHYTO10 MOI 10 +0.2 N.D. N.D. +0.1 -2.8
phage 36hr PHYTO11 MOI 1 -0.5 N.D. N.D. -0.2 -1.7
phage 36hr PHYTO8 MOI 0.1 +0.0 N.D. N.D. -0.5 -2.0
phage 24hr PHYTO3 MOI 10 -1.3 N.D. N.D. -0.1 -0.9
phage 36hr PHYTO6 MOI 0.1 -0.4 N.D. N.D. -0.5 -1.4
carbon source adipate (C) -0.4 N.D. N.D. -0.5 -1.3
nophagecontrol 36hr Phyto Lib only -1.0 N.D. N.D. -0.2 -1.0
phage 24hr PHYTO11 MOI 1 -1.1 N.D. N.D. -0.3 -0.8
phage 36hr PHYTO1 MOI 1 -0.4 N.D. N.D. -0.1 -1.6
phage 36hr PHYTO4 MOI 1 -1.0 N.D. N.D. -0.7 -0.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.2 N.D. N.D. -0.8 -1.3
phage 24hr PHYTO2 MOI 0.1 +0.1 N.D. N.D. +0.3 -2.3
phage 24hr PHYTO10 MOI 1 -0.4 N.D. N.D. -0.8 -0.6
phage 24hr PHYTO3 MOI 10 -0.7 N.D. N.D. -0.5 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 N.D. N.D. -0.7 -0.5
phage P. phyto corn MOI 0.1 -0.7 N.D. N.D. -0.1 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. N.D. -0.5 -1.3
phage 36hr PHYTO3 MOI 0.1 -1.6 N.D. N.D. -0.2 +0.2
phage PHYTO3 MOI 0.1 -1.1 N.D. N.D. +0.2 -0.6
phage 36hr PHYTO6 MOI 10 +0.4 N.D. N.D. +0.1 -1.5
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.8 N.D. N.D. -0.2 -0.8
in planta Plant=switchgrass; PreTreatment=None; PlantTreatment=low_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=21days -0.4 N.D. N.D. +0.6 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. N.D. +1.0 +0.5
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