Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS25465	BPHYT_RS25470	BPHYT_RS25475	BPHYT_RS25480	BPHYT_RS25485
phage	P. phyto PHYTO2 MOI 1	+0.2	-2.7	N.D.	-1.5	N.D.
carbon source	2-Deoxy-D-ribonic lithium salt (C)	+0.1	-2.9	N.D.	-0.0	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	+0.4	-2.9	N.D.	-0.2	N.D.
phage	P. phyto corn MOI 0.1	-0.5	-1.7	N.D.	-0.5	N.D.
phage	24hr PHYTO7 MOI 10	-0.2	-0.6	N.D.	-1.6	N.D.
phage	24hr PHYTO11 MOI 1	-0.2	-0.1	N.D.	-2.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-2.1	N.D.	-0.3	N.D.
phage	24hr PHYTO3 MOI 10	-1.0	-1.1	N.D.	-0.2	N.D.
phage	P. phyto corn MOI 1	-0.3	-1.3	N.D.	-0.5	N.D.
phage	24hr PHYTO3 MOI 10	-0.3	-0.7	N.D.	-1.1	N.D.
vitamin	No vitamins t1	+0.3	-1.4	N.D.	-0.7	N.D.
nophagecontrol	36hr Phyto Lib only	+0.3	-1.8	N.D.	-0.2	N.D.
phage	36hr PHYTO1 MOI 10	+0.3	-1.9	N.D.	+0.0	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-1.6	N.D.	-0.4	N.D.
phage	24hr PHYTO7 MOI 1	+0.5	-1.5	N.D.	-0.5	N.D.
phage	24hr PHYTO2 MOI 0.1	+0.4	-1.9	N.D.	+0.5	N.D.
in planta	Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1	+0.6	-1.5	N.D.	+0.2	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-1.7	N.D.	+1.3	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	-1.4	N.D.	+0.8	N.D.
phage	24hr PHYTO4 MOI 10	+0.1	+0.9	N.D.	-1.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.5	-1.3	N.D.	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-1.2	N.D.	+0.5	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-1.5	N.D.	+0.8	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	-0.9	N.D.	+1.1	N.D.
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-1.6	N.D.	+1.0	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.1	+1.9	N.D.	-0.9	N.D.
motility	outer cut, LB soft agar motility assay	+0.1	+1.8	N.D.	-0.4	N.D.
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.6	+0.7	N.D.	+0.8	N.D.
phage	36hr PHYTO9 MOI 1	+0.8	+1.4	N.D.	+0.0	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.9	+1.6	N.D.	+1.0	N.D.