Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25355 and BPHYT_RS25360 are separated by 184 nucleotidesBPHYT_RS25360 and BPHYT_RS25365 are separated by 27 nucleotidesBPHYT_RS25365 and BPHYT_RS25370 are separated by 26 nucleotidesBPHYT_RS25370 and BPHYT_RS25375 are separated by 350 nucleotides BPHYT_RS25355: BPHYT_RS25355 - LuxR family transcriptional regulator, at 1,264,324 to 1,267,026 _RS25355 BPHYT_RS25360: BPHYT_RS25360 - enoyl-CoA hydratase, at 1,267,211 to 1,267,981 _RS25360 BPHYT_RS25365: BPHYT_RS25365 - thiolase, at 1,268,009 to 1,269,250 _RS25365 BPHYT_RS25370: BPHYT_RS25370 - acyl-CoA dehydrogenase, at 1,269,277 to 1,270,419 _RS25370 BPHYT_RS25375: BPHYT_RS25375 - lipid-transfer protein, at 1,270,770 to 1,271,951 _RS25375
Group Condition BPHYT_RS25355 BPHYT_RS25360 BPHYT_RS25365 BPHYT_RS25370 BPHYT_RS25375
nophagecontrol 36hr Phyto Lib only -0.3 N.D. N.D. -2.7 -0.5
phage 24hr PHYTO MOI 0.1 -0.0 N.D. N.D. -2.7 -0.5
phage 24hr PHYTO3 MOI 10 -0.3 N.D. N.D. -2.1 -0.5
phage 24hr PHYTO6 MOI 1 -0.2 N.D. N.D. -2.7 +0.4
phage 36hr PHYTO11 MOI 0.1 -0.7 N.D. N.D. -1.3 -0.2
phage 36hr PHYTO8 MOI 10 -0.7 N.D. N.D. -1.0 -0.5
phage 24hr PHYTO2 MOI 0.1 +0.0 N.D. N.D. -1.9 -0.3
phage 24hr PHYTO6 MOI 0.1 -0.1 N.D. N.D. -1.8 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 N.D. N.D. -1.2 -0.4
phage 36hr PHYTO7 MOI 0.1 -0.7 N.D. N.D. -0.9 -0.2
phage 36hr PHYTO6 MOI 0.1 -0.4 N.D. N.D. -1.2 -0.1
phage 36hr PHYTO6 MOI 1 -0.4 N.D. N.D. -1.3 -0.1
phage 36hr PHYTO1 MOI 1 -0.0 N.D. N.D. -1.3 -0.3
nophagecontrol 36hr Phyto Lib only +0.0 N.D. N.D. -1.7 +0.0
phage 24hr PHYTO4 MOI 0.1 -0.5 N.D. N.D. -1.1 +0.1
phage 36hr PHYTO2 MOI 1 -1.2 N.D. N.D. +0.3 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. N.D. -1.4 +0.1
phage 36hr PHYTO2 MOI 1 -0.3 N.D. N.D. -1.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 N.D. N.D. -1.6 +0.4
phage 24hr PHYTO1 MOI 1 -0.4 N.D. N.D. -0.9 +0.3
carbon source D-Glucose (C) +0.3 N.D. N.D. -1.4 +0.2
phage 24hr PHYTO3 MOI 10 -0.3 N.D. N.D. -1.1 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 N.D. N.D. -1.1 +0.2
phage 24hr PHYTO7 MOI 10 -0.2 N.D. N.D. +1.6 -0.5
phage 24hr PHYTO11 MOI 0.1 -0.2 N.D. N.D. +1.4 +0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.5 N.D. N.D. +0.6 +0.7
supernatant control Vogels_fungal_media 0.1X +0.3 N.D. N.D. +1.2 +0.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. N.D. +0.7 +1.3
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. N.D. +0.7 +1.6
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. N.D. +1.3 +1.3
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