Fitness for 5 genes in Burkholderia phytofirmans PsJN

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	BPHYT_RS25265	BPHYT_RS25270	BPHYT_RS25275	BPHYT_RS25280	BPHYT_RS25285
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days	+0.4	-0.2	-0.8	-1.3	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.0	-0.4	-0.1	-2.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.3	-1.2	-0.4	-0.7	-0.4
phage	36hr PHYTO1 MOI 1	+0.2	-2.7	+0.2	+0.2	-0.5
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days	-0.4	-1.3	+0.1	-0.1	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-1.2	-0.7	-0.3	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	+0.3	-1.9	+0.1	-0.6
phage	24hr PHYTO6 MOI 1	+0.3	-1.7	+0.2	+0.3	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	-0.6	-1.1	+0.6	-0.4
phage	24hr PHYTO MOI 0.1	+0.4	-1.6	+0.2	-0.2	-0.2
motility	outer cut, LB soft agar motility assay	-0.7	+0.6	+0.1	-0.2	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.8	+0.5	+0.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.2	+0.4	+0.3	-2.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	-1.6	+0.9	+0.5	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.4	-1.9	+0.2	-0.3	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	-0.9	-0.1	-1.3	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.3	-1.0	-0.1	-0.8	+0.7
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	+0.7	-0.0	-0.5	-1.3
phage	36hr PHYTO10 MOI 10	+0.0	+0.3	+0.6	-0.4	-1.3
supernatant control	Vogels_fungal_media; pH 5.5	-0.3	+0.4	+0.6	+0.5	-1.9
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.3	-0.2	+1.1	-1.2
carbon source	Disodium Glutarate (C)	-0.5	+0.8	+0.2	+0.2	-0.9
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.5	-2.1	+0.6	+1.0	+0.0
phage	24hr PHYTO9 MOI 10	-0.4	-0.2	+0.8	-0.3	+0.9
in planta	Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days	+0.0	+0.4	+0.9	+0.5	-1.0
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.5	+1.3	+0.1	-0.5
phage	24hr PHYTO10 MOI 1	-0.0	+1.2	+0.8	+0.2	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+1.4	+0.3	-0.1	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	+0.5	+0.8	+0.8	+0.4	-0.8
in planta	Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+1.0	+0.5	-0.5	+0.5