Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25250 and BPHYT_RS25255 are separated by 57 nucleotidesBPHYT_RS25255 and BPHYT_RS25260 are separated by 110 nucleotidesBPHYT_RS25260 and BPHYT_RS25265 are separated by 33 nucleotidesBPHYT_RS25265 and BPHYT_RS25270 are separated by 169 nucleotides BPHYT_RS25250: BPHYT_RS25250 - porin, at 1,239,379 to 1,240,527 _RS25250 BPHYT_RS25255: BPHYT_RS25255 - LysR family transcriptional regulator, at 1,240,585 to 1,241,505 _RS25255 BPHYT_RS25260: BPHYT_RS25260 - glutathione S-transferase, at 1,241,616 to 1,242,257 _RS25260 BPHYT_RS25265: BPHYT_RS25265 - pyridoxamine 5'-phosphate oxidase, at 1,242,291 to 1,244,339 _RS25265 BPHYT_RS25270: BPHYT_RS25270 - multidrug MFS transporter, at 1,244,509 to 1,245,864 _RS25270
Group Condition BPHYT_RS25250 BPHYT_RS25255 BPHYT_RS25260 BPHYT_RS25265 BPHYT_RS25270
phage 36hr PHYTO1 MOI 1 -0.3 N.D. N.D. +0.2 -2.7
in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. N.D. -0.4 -1.3
nitrogen source L-Glutamic (N) -1.1 N.D. N.D. -0.3 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 N.D. N.D. -0.1 -1.6
phage 24hr PHYTO9 MOI 10 -1.4 N.D. N.D. -0.4 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.4 N.D. N.D. +0.4 -1.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 N.D. N.D. -0.3 -1.8
phage 36hr PHYTO9 MOI 0.1 -0.5 N.D. N.D. +0.3 -1.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.5 N.D. N.D. -0.2 +0.3
carbon source Phenylacetic 5 mM (C) +0.4 N.D. N.D. -0.9 -0.7
phage 24hr PHYTO6 MOI 1 +0.3 N.D. N.D. +0.3 -1.7
phage 24hr PHYTO MOI 0.1 +0.2 N.D. N.D. +0.4 -1.6
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 N.D. N.D. +0.5 -2.1
phage P. phyto PHYTO2 MOI 1 -0.1 N.D. N.D. +0.4 -1.3
phage 24hr PHYTO4 MOI 10 +0.0 N.D. N.D. +0.5 -1.4
phage 24hr PHYTO8 MOI 1 -1.4 N.D. N.D. -0.3 +0.8
phage 36hr PHYTO11 MOI 1 -1.1 N.D. N.D. +0.8 -0.0
carbon source D,L-Lactate (C) +0.9 N.D. N.D. -0.3 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1 N.D. N.D. -0.2 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 N.D. N.D. -0.1 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.1 N.D. N.D. -0.2 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.8 N.D. N.D. +0.4 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.2 N.D. N.D. +0.4 -1.2
carbon source Sebacic (C) +0.5 N.D. N.D. -0.5 +0.8
carbon source Azelaic (C) +0.9 N.D. N.D. +0.5 -0.4
carbon source Disodium Glutarate (C) +0.9 N.D. N.D. -0.5 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 N.D. N.D. +0.4 +1.4
phage 24hr PHYTO1 MOI 10 +0.4 N.D. N.D. +0.3 +1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.9 N.D. N.D. +0.2 +0.8
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 N.D. N.D. +0.5 +1.0
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