Fitness for 5 genes in Burkholderia phytofirmans PsJN

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500 ntBPHYT_RS25245 and BPHYT_RS25250 are separated by 269 nucleotidesBPHYT_RS25250 and BPHYT_RS25255 are separated by 57 nucleotidesBPHYT_RS25255 and BPHYT_RS25260 are separated by 110 nucleotidesBPHYT_RS25260 and BPHYT_RS25265 are separated by 33 nucleotides BPHYT_RS25245: BPHYT_RS25245 - glycine/betaine ABC transporter substrate-binding protein, at 1,238,159 to 1,239,109 _RS25245 BPHYT_RS25250: BPHYT_RS25250 - porin, at 1,239,379 to 1,240,527 _RS25250 BPHYT_RS25255: BPHYT_RS25255 - LysR family transcriptional regulator, at 1,240,585 to 1,241,505 _RS25255 BPHYT_RS25260: BPHYT_RS25260 - glutathione S-transferase, at 1,241,616 to 1,242,257 _RS25260 BPHYT_RS25265: BPHYT_RS25265 - pyridoxamine 5'-phosphate oxidase, at 1,242,291 to 1,244,339 _RS25265
Group Condition BPHYT_RS25245 BPHYT_RS25250 BPHYT_RS25255 BPHYT_RS25260 BPHYT_RS25265
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.5 N.D. N.D. -0.2
phage 24hr PHYTO9 MOI 10 N.D. -1.4 N.D. N.D. -0.4
phage 24hr PHYTO8 MOI 1 N.D. -1.4 N.D. N.D. -0.3
motility inner cut, LB soft agar motility assay N.D. -1.0 N.D. N.D. -0.4
nitrogen source L-Glutamic (N) N.D. -1.1 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.3 N.D. N.D. -1.0
phage 24hr PHYTO11 MOI 0.1 N.D. -1.0 N.D. N.D. -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 N.D. N.D. -1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.7 N.D. N.D. -0.4
supernatant control Vogels_fungal_media 0.1X N.D. -1.1 N.D. N.D. +0.1
r2a control R2A control N.D. -0.9 N.D. N.D. +0.2
carbon source Phenylacetic 5 mM (C) N.D. +0.4 N.D. N.D. -0.9
phage 36hr PHYTO11 MOI 1 N.D. -1.1 N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.6 N.D. N.D. -0.5
phage 24hr PHYTO11 MOI 1 N.D. +0.9 N.D. N.D. -0.7
phage P. phyto corn MOI 0.1 N.D. +0.8 N.D. N.D. -0.4
phage 24hr PHYTO7 MOI 10 N.D. +0.9 N.D. N.D. -0.5
carbon source Disodium Glutarate (C) N.D. +0.9 N.D. N.D. -0.5
carbon source D,L-Lactate (C) N.D. +0.9 N.D. N.D. -0.3
carbon source Sebacic (C) N.D. +1.1 N.D. N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +1.1 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.1 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +1.1 N.D. N.D. -0.1
carbon source D-Galacturonic Acid (C) N.D. +0.7 N.D. N.D. +0.5
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.5 N.D. N.D. +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.8 N.D. N.D. +0.4
carbon source Azelaic (C) N.D. +0.9 N.D. N.D. +0.5
phage 36hr PHYTO6 MOI 1 N.D. +1.0 N.D. N.D. +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +1.2 N.D. N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. +1.1 N.D. N.D. +0.5
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